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Report for CCDS36050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36050.1 Public Mus musculus 10 Lin7a 23 108 98 CCDS HistoryNCBI Gene:108030Re-query CCDS DB by CCDS ID:36050.1Re-query CCDS DB by GeneID:108030See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105280.4 ENSMUSP00000100916.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105280.4Link to Ensembl Protein Viewer:ENSMUSP00000100916.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105280Re-query CCDS DB by Protein ID:ENSMUSP00000100916
Original member Current member EBI ENSMUST00000218031.1 ENSMUSP00000151715.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218031.1Link to Ensembl Protein Viewer:ENSMUSP00000151715.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218031Re-query CCDS DB by Protein ID:ENSMUSP00000151715
Original member NCBI NM_001033223.2 NP_001028395.1 Updated not alive Link to Nucleotide Sequence:NM_001033223.2Link to Protein Sequence:NP_001028395.1Re-query CCDS DB by Nucleotide ID:NM_001033223Re-query CCDS DB by Protein ID:NP_001028395
Current member NCBI NM_001033223.3 NP_001028395.1 Accepted alive Link to Nucleotide Sequence:NM_001033223.3Link to Protein Sequence:NP_001028395.1Re-query CCDS DB by Nucleotide ID:NM_001033223Re-query CCDS DB by Protein ID:NP_001028395Link to BLAST:NP_001028395.1
Original member NCBI NM_001284329.1 NP_001271258.1 Updated not alive Link to Nucleotide Sequence:NM_001284329.1Link to Protein Sequence:NP_001271258.1Re-query CCDS DB by Nucleotide ID:NM_001284329Re-query CCDS DB by Protein ID:NP_001271258
Current member NCBI NM_001284329.2 NP_001271258.1 Accepted alive Link to Nucleotide Sequence:NM_001284329.2Link to Protein Sequence:NP_001271258.1Re-query CCDS DB by Nucleotide ID:NM_001284329Re-query CCDS DB by Protein ID:NP_001271258Link to BLAST:NP_001271258.1

Chromosomal Locations for CCDS 36050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 107382597 107382713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107411953 107412171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGGGAGGGAAGGAACAGAATTCCCCGATTTACATCTCCCGCATCATCCCTGGAGGGGTGGCTGAAAGAC
ATGGAGGCCTCAAAAGAGGGGACCAGCTGCTATCAGTGAACGGAGTGAGTGTGGAAGGGGAGCACCATGA
GAAAGCTGTGGAACTTCTCAAGGCTGCTAAGGACAGTGTGAAGCTGGTGGTCAGATACACCCCAAAAGTC
CTGGAAGAGATGGAGGCTCGTTTCGAGAAGCTGCGGACAGCTCGGCGTCGACAGCAGCAGCAGTTGCTCA
TTCAGCAGCAGCAACAGCAGCAGCAACAACAACCACAACAAAACCACATGTCATAG

Translation (111 aa):
MGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKV
LEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQPQQNHMS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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