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Report for CCDS60038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60038.1 Public Homo sapiens 1 CEP85 24 110 108 CCDS HistoryNCBI Gene:64793Re-query CCDS DB by CCDS ID:60038.1Re-query CCDS DB by GeneID:64793See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000640292.2 ENSP00000492362.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640292.2Link to Ensembl Protein Viewer:ENSP00000492362.2Re-query CCDS DB by Nucleotide ID:ENST00000640292Re-query CCDS DB by Protein ID:ENSP00000492362
Original member Current member NCBI NM_001281517.3 NP_001268446.1 Accepted alive Link to Nucleotide Sequence:NM_001281517.3Link to Protein Sequence:NP_001268446.1Re-query CCDS DB by Nucleotide ID:NM_001281517Re-query CCDS DB by Protein ID:NP_001268446Link to BLAST:NP_001268446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268446.1 711 Q6P2H3-4 711 100% 0 0

Chromosomal Locations for CCDS 60038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26239784 26239838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26255171 26255865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26257597 26257730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26258143 26258260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26259617 26259802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26268483 26268635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26269460 26269614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26271014 26271107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26272021 26272071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26274964 26275071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26276535 26276760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26277133 26277293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGCCATGCAGGAGAAATATCCAACTGAGGGGATCTCTCACGTCACTTCACCGAATTTTTGCAGCTCAA
GTGGCAGTCCTCCTTTCCAGCCCATCAAAAGCCACGTAACCATTCCAACAGCCCATGTGATGCCTTCTAC
TTTAGGGACCTCTCCTGCCAAGCCAAATTCTACACCTGTTGGACCCTCTTCCTCTAAACTCCCTTTGTCA
GGGTTGGCTGAAAGTGTGGGAATGACAAGAAATGGAGACCTCGGTGCAATGAAACATTCTCCAGGCCTAT
CTAGAGATCTCATGTATTTCTCTGGTGCTACTGGAGAAAATGGAATTGAGCAGTCCTGGTTTCCAGCAGT
GGGCCATGAAAGACAAGAAGAGGCGAGGAAGTTTGATATTCCTAGCATGGAATCTACCCTCAATCAGTCG
GCAATGATGGAGACACTTTATTCAGATCCTCACCACCGAGTCCGCTTCCACAACCCAAGAACCAGCACAA
GTAAGGAGTTGTACAGAGTGTTGCCTGAGGCCAAGAAGGCACCGGGCAGCGGGGCAGTGTTTGAGCGGAA
TGGACCACATTCTAATAGCAGTGGGGTCCTCCCTTTGGGACTCCAGCCTGCTCCCGGGCTCTCCAAGCCT
CTGCCCTCTCAGGTGTGGCAGCCGAGTCCTGACACTTGGCATCCCCGAGAGCAATCTTGTGAACTCAGCA
CTTGTCGGCAGCAGCTGGAATTGATTCGTTTACAGATGGAGCAAATGCAGCTTCAGAATGGAGCCATCTG
CCACCATCCTGCTGCTTTTGGTCCTTCACTGCCCATCTTAGAGCCAGCACAGTGGATCAGCATCTTGAAC
AGTAATGAACACCTTCTGAAGGAAAAAGAGCTTCTCATTGACAAGCAGAGGAAACACATCTCTCAGCTGG
AGCAGAAAGTGCGAGAGAGCGAACTGCAAGTCCACAGTGCCCTCTTGGGCCGCCCTGCCCCCTTTGGTGA
TGTCTGCTTGCTGAGGCTACAGGAATTGCAGCGAGAAAACACTTTCTTACGTGCACAGTTTGCACAGAAG
ACAGAAGCCTTGAGCAGAGAAAAGATTGACCTTGAAAAGAAACTCTCTGCTTCTGAAGTTGAAGTCCAGC
TCATCAGAGAGTCGCTCAAAGTGGCGTTGCAGAAGCATTCTGAGGAAGTGAAGAAACAGGAAGAAAGGGT
CAAAGGTCGTGATAAACATATCAATAATTTGAAAAAGAAATGCCAGAAGGAATCAGAGCAGAACCGGGAG
AAGCAGCAGCGTATTGAGACCTTGGAGCGCTACCTGGCTGACCTGCCCACACTGGAAGACCATCAGAAGC
AGAGCCAGCAGCTTAAGGATTCTGAGTTGAAGAGCACAGAGCTGCAGGAGAAAGTGACTGAGCTGGAGAG
TTTGCTGGAGGAGACCCAGGCAATCTGCAGAGAGAAGGAGATTCAACTGGAAAGCCTGAGGCAGAGAGAA
GCAGAATTCTCCTCCGCTGGACATAGCCTGCAAGATAAACAGTCTGTGGAGGAGACCAGTGGAGAAGGTC
CAGAAGTGGAAATGGAGTCCTGGCAGAAGCGATACGATTCGCTCCAAAAGATTGTGGAGAAGCAGCAGCA
GAAGATGGATCAGTTGCGCTCACAAGTACAGAGCCTAGAGCAGGAAGTGGCTCAAGAAGAAGGAACAAGC
CAGGCCCTGAGAGAGGAGGCCCAGCGAAGGGATTCAGCCCTGCAGCAGCTGCGCACAGCCGTGAAGGAGC
TTTCAGTGCAAAACCAGGACTTGATTGAGAAGAATCTGACACTCCAGGAACACCTGCGCCAGGCCCAACC
AGGGTCTCCACCTTCACCAGACACGGCCCAGCTGGCACTTGAGCTGCACCAGGAGTTGGCCAGTTGCCTT
CAAGATCTGCAGGCTGTCTGTAGCATTGTGACCCAGAGGGCCCAGGGCCATGACCCCAATCTCTCCCTGC
TCCTGGGCATTCACTCAGCACAGCACCCAGAGACTCAGCTAGATTTGCAGAAGCCAGATGTGATCAAGAG
GAAACTAGAAGAGGTTCAACAGCTGCGTCGTGACATTGAGGACTTAAGGACCACCATGTCAGACAGATAT
GCCCAGGACATGGGAGAAAACTGTGTCACACAGTGA

Translation (711 aa):
MAMQEKYPTEGISHVTSPNFCSSSGSPPFQPIKSHVTIPTAHVMPSTLGTSPAKPNSTPVGPSSSKLPLS
GLAESVGMTRNGDLGAMKHSPGLSRDLMYFSGATGENGIEQSWFPAVGHERQEEARKFDIPSMESTLNQS
AMMETLYSDPHHRVRFHNPRTSTSKELYRVLPEAKKAPGSGAVFERNGPHSNSSGVLPLGLQPAPGLSKP
LPSQVWQPSPDTWHPREQSCELSTCRQQLELIRLQMEQMQLQNGAICHHPAAFGPSLPILEPAQWISILN
SNEHLLKEKELLIDKQRKHISQLEQKVRESELQVHSALLGRPAPFGDVCLLRLQELQRENTFLRAQFAQK
TEALSREKIDLEKKLSASEVEVQLIRESLKVALQKHSEEVKKQEERVKGRDKHINNLKKKCQKESEQNRE
KQQRIETLERYLADLPTLEDHQKQSQQLKDSELKSTELQEKVTELESLLEETQAICREKEIQLESLRQRE
AEFSSAGHSLQDKQSVEETSGEGPEVEMESWQKRYDSLQKIVEKQQQKMDQLRSQVQSLEQEVAQEEGTS
QALREEAQRRDSALQQLRTAVKELSVQNQDLIEKNLTLQEHLRQAQPGSPPSPDTAQLALELHQELASCL
QDLQAVCSIVTQRAQGHDPNLSLLLGIHSAQHPETQLDLQKPDVIKRKLEEVQQLRRDIEDLRTTMSDRY
AQDMGENCVTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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