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Report for CCDS13938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13938.1 Public Homo sapiens 22 TST 24 110 108 CCDS HistoryNCBI Gene:7263Re-query CCDS DB by CCDS ID:13938.1Re-query CCDS DB by GeneID:7263See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249042.8 ENSP00000249042.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249042.8Link to Ensembl Protein Viewer:ENSP00000249042.3Re-query CCDS DB by Nucleotide ID:ENST00000249042Re-query CCDS DB by Protein ID:ENSP00000249042
Original member Current member EBI ENST00000403892.7 ENSP00000385828.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403892.7Link to Ensembl Protein Viewer:ENSP00000385828.3Re-query CCDS DB by Nucleotide ID:ENST00000403892Re-query CCDS DB by Protein ID:ENSP00000385828
Original member Current member EBI ENST00000622841.1 ENSP00000478739.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622841.1Link to Ensembl Protein Viewer:ENSP00000478739.1Re-query CCDS DB by Nucleotide ID:ENST00000622841Re-query CCDS DB by Protein ID:ENSP00000478739
Original member Current member NCBI NM_001270483.1 NP_001257412.1 Accepted alive Link to Nucleotide Sequence:NM_001270483.1Link to Protein Sequence:NP_001257412.1Re-query CCDS DB by Nucleotide ID:NM_001270483Re-query CCDS DB by Protein ID:NP_001257412Link to BLAST:NP_001257412.1
Original member Current member NCBI NM_003312.6 NP_003303.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003312.6Link to Protein Sequence:NP_003303.2Re-query CCDS DB by Nucleotide ID:NM_003312Re-query CCDS DB by Protein ID:NP_003303Link to BLAST:NP_003303.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257412.1 297 Q16762 297 100% 0 0
NP_003303.2 297 Q16762 297 100% 0 0

Chromosomal Locations for CCDS 13938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37011027 37011325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37018138 37018732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGTTCATCAGGTGCTCTACCGGGCGCTGGTCTCCACCAAGTGGCTGGCGGAGTCCATCAGGACTGGCA
AGCTGGGGCCCGGCCTGCGGGTGCTGGACGCGTCCTGGTACTCACCAGGCACCCGAGAGGCCCGCAAGGA
GTACCTCGAGCGCCACGTACCCGGCGCCTCTTTCTTTGACATAGAAGAGTGCCGGGACACGGCGTCGCCC
TACGAGATGATGCTGCCCAGCGAGGCTGGCTTCGCCGAGTATGTGGGCCGCCTGGGCATCAGCAACCACA
CGCACGTGGTGGTGTATGATGGTGAACACCTGGGCAGCTTCTATGCTCCCCGGGTCTGGTGGATGTTCCG
TGTGTTTGGCCACCGCACCGTATCAGTGCTCAATGGTGGCTTCCGGAACTGGCTGAAGGAGGGCCACCCG
GTGACATCCGAGCCCTCACGCCCAGAACCGGCCGTCTTCAAAGCCACACTGGACCGCTCCCTGCTCAAGA
CCTACGAGCAGGTGCTGGAGAACCTTGAATCTAAGAGGTTCCAGCTGGTGGATTCAAGGTCTCAAGGGCG
GTTCCTGGGCACCGAGCCGGAGCCGGATGCAGTAGGACTGGACTCGGGCCATATCCGTGGTGCCGTCAAC
ATGCCTTTCATGGACTTCCTGACTGAGGATGGCTTCGAGAAGGGCCCAGAAGAGCTCCGTGCTCTGTTCC
AGACCAAGAAGGTGGATCTCTCGCAGCCTCTCATTGCCACGTGCCGCAAGGGAGTCACCGCCTGCCACGT
GGCCTTGGCTGCCTACCTCTGCGGCAAGCCTGATGTGGCCGTGTACGATGGCTCCTGGTCCGAGTGGTTT
CGCCGGGCCCCCCCAGAGAGCCGTGTGTCCCAGGGAAAGTCTGAGAAGGCCTGA

Translation (297 aa):
MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDTASP
YEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHP
VTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQLVDSRSQGRFLGTEPEPDAVGLDSGHIRGAVN
MPFMDFLTEDGFEKGPEELRALFQTKKVDLSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWF
RRAPPESRVSQGKSEKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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