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Report for CCDS56605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56605.1 Public Homo sapiens X NXT2 24 110 108 CCDS HistoryNCBI Gene:55916Re-query CCDS DB by CCDS ID:56605.1Re-query CCDS DB by GeneID:55916See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56605.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372106.6 ENSP00000361178.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372106.6Link to Ensembl Protein Viewer:ENSP00000361178.1Re-query CCDS DB by Nucleotide ID:ENST00000372106Re-query CCDS DB by Protein ID:ENSP00000361178
Original member Current member NCBI NM_001242617.2 NP_001229546.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242617.2Link to Protein Sequence:NP_001229546.1Re-query CCDS DB by Nucleotide ID:NM_001242617Re-query CCDS DB by Protein ID:NP_001229546Link to BLAST:NP_001229546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229546.1 142 Q9NPJ8-1 142 100% 0 0

Chromosomal Locations for CCDS 56605.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 109537007 109537021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109538045 109538131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109541475 109541619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109542507 109542688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCCACGTCTCTGGATTTTAAAACTTATGTAGATCAGGCATGTAGAGCTGCTGAGGAGTTTGTCAATA
TTTACTATGAGACAATGGATAAAAGAAGACGGGCACTAACCAGGCTGTATCTGGACAAGGCCACCTTAAT
ATGGAATGGAAATGCTGTTTCAGGGCTGGATGCCCTAAATAATTTTTTTGACACATTGCCTTCTAGTGAG
TTCCAGGTCAATATGTTAGATTGCCAACCAGTTCATGAGCAAGCAACTCAGTCCCAAACTACAGTTCTTG
TTGTGACCAGTGGAACTGTGAAGTTTGATGGAAACAAACAACATTTCTTCAACCAGAACTTCCTGCTGAC
TGCTCAGTCCACTCCCAACAATACTGTGTGGAAGATTGCAAGTGATTGCTTCCGTTTTCAAGATTGGTCT
AGTAGTTAA

Translation (142 aa):
MATSLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSE
FQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS
SS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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