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Report for CCDS56004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56004.1 Public Homo sapiens 16 HYDIN 24 110 108 CCDS HistoryNCBI Gene:54768Re-query CCDS DB by CCDS ID:56004.1Re-query CCDS DB by GeneID:54768See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538248.5 ENSP00000444970.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538248.5Link to Ensembl Protein Viewer:ENSP00000444970.1Re-query CCDS DB by Nucleotide ID:ENST00000538248Re-query CCDS DB by Protein ID:ENSP00000444970
Original member Current member NCBI NM_001198542.1 NP_001185471.1 Accepted alive Link to Nucleotide Sequence:NM_001198542.1Link to Protein Sequence:NP_001185471.1Re-query CCDS DB by Nucleotide ID:NM_001198542Re-query CCDS DB by Protein ID:NP_001185471Link to BLAST:NP_001185471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185471.1 950 Q4G0P3-8 950 100% 0 0

Chromosomal Locations for CCDS 56004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 71031675 71031917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71060504 71060656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71062169 71062333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71064705 71064840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71067290 71067390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71069267 71069502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71079885 71079952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71088301 71088524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71093817 71093935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71115696 71115795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71129640 71129823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71137151 71137352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71152659 71152783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71162531 71162730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71175607 71175741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71178928 71179047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71184865 71184990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71186761 71186918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71230630 71230687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGAGAGTGCGGGCGGCTTCAAGCTGGGTATGGAGCCCCTCAGCGGCGGCGGGGTCTGTGAGAAAAAAA
AATTACTAAAAATGACAAGTAGAAGACTTGAGGAGTCCATGGGGGCTGTTCAGATGGGATTGGTCAATAT
GTTCAAAGGATTTCAAAGCAAGGTTTTGCCACCCCTGAGTCCAAAGGTGGTTACAGAAGAAGAAGTAAAC
CGAATGCTTACACCCTCAGAGTTCCTGAAGGAAATGTCCCTGACCACCGAGCAGAGACTGGCAAAAACAC
GTTTGATGTGCCGACCACAGATCATCGAACTCTTAGATATGGGGGAAACAACACATCAGAAGTTTTCAGG
AATTGACCTGGATCAGGCATTATTCCAGCCCTTTCCATCAGAAATTATATTTCAGAACTACACTCCCTGT
GAAGTCTATGAAGTTCCACTGATTTTGAGGAACAATGACAAAATTCCAAGGTTGGTGAAAGTTGTGGAAG
AAAGTTCGCCTTACTTTAAAGTAATCAGCCCCAAAGATATTGGCCACAAAGTGGCTCCTGGAGTGCCTTC
CATATTCCGAATCCTCTTTACTCCAGAGGAGAACAAGGATTACGCCCATACGTTGACCTGTGTTACTGAA
AGAGAAAAGTTTATTGTACCCATCAAAGCTAGAGGGGCACGAGCCATTCTCGATTTTCCTGACAAGCTGA
ATTTTTCCACTTGTCCTGTCAAATACAGCACCCAGAAGATTCTGCTGGTACGAAACATTGGCAACAAAAA
TGCTGTATTTCACATCAAAACTTGTAGGCCTTTCTCTATAGAACCAGCTATTGGAACTCTTAATGTGGGA
GAGTCCATGCAACTGGAAGTGGAGTTTGAGCCACAGAGTGTGGGCGATCACAGTGGAAGACTTATCGTGT
GTTATGACACAGGTGAAAAGGTGTTTGTATCTCTCTATGGAGCTGCCATAGACATGAATATAAGGCTGGA
TAAGAATTCCTTGACCATCGAGAAAACCTACATATCTCTGGCCAATCAGCGAACTATAACCATTCACAAT
CGCAGTAATATCATTGCCCATTTCCTGTGGAAGGTATTTGCTACCCAGCAAGAAGAGGACAGAGAAAAAT
ATAGGGCCTGTGATGATCTGATCAAAGAGGAGAAGGATGAGACTGATGAGTTTTTTGAAGAGTGCATTAC
TGATCCTTTACTCCGAGAACATCTTTCTGTTCTGTCCCGAACCTTTGCGAATCAGAGGAGGCTGGTGCAG
GGAGACAGCAAGCTGTTCTTCAATAACGTTTTCACTGTGGAGCCCCTGGAAGGTGATGTCTGGCCCAACT
CATCAGCTGAAATCACCGTGTACTTTAACCCACTAGAAGCCAAGCTCTATCAACAGACCATTTACTGCGA
CATTTTAGGCCGAGAAATCCGTCTGCCCCTCCGAATCAAAGGGGAAGGCATGGGACCTAAGATTCACTTC
AACTTTGAATTGCTGGATATTGGGAAAGTTTTCACTGGATCTGCACATTGTTATGAGGCGATACTGTACA
ACAAAGGCAGCATCGATGCTCTCTTCAACATGACCCCTCCAACTTCAGCTTTGGGGGCCTGCTTTGTTTT
CAGTCCCAAGGAAGGCATCATTGAACCAAGTGGAGTCCAAGCTATCCAGATCTCCTTCAGCTCTACCATC
CTGGGAAACTTTGAAGAAGAGTTCCTGGTCAATGTCAATGGGTCACCTGAGCCTGTGAAACTGACCATTA
GAGGCTGTGTCATTGGACCTACCTTCCATTTTAATGTTCCAGCTCTGCACTTTGGTGATGTTTCCTTTGG
GTTTCCTCATACCTTGATATGTTCCCTCAATAATACCTCTTTGATCCCCATGACTTACAAACTGCGTATC
CCTGGGGATGGCCTTGGCCATAAAAGCATTTCATATTGTGAGCAGCATGTGGACTACAAAAGACCATCTT
GGACCAAGGAAGAAATATCCTCAATGAAACCAAAAGAATTCACCATCTCTCCTGACTGTGGCACCATTCG
CCCCCAGGGATTTGCTGCTATCAGGGTGACATTATGCTCCAACACTGTGCAGAAATACGAGCTGGCACTC
GTGGTGGACGTGGAGGGCATCGGAGAAGAGGTGCTGGCGCTCTTAATTACAGCAAGGTGTGTTGTACCTG
CCCTCCACCTGGTCAATACAGAGGTGGACTTTGGGCACTGCTTCCTGAAGTACCCGTATGAGAAAACACT
CCAGCTTGCCAATCAAGATGACCTCCCAGGATTCTATGAGGTCCAGCCTCAGGTGTGTGAGGAGGTGCCT
ACTGTGCTGTTTTCCAGCCCCACCCCCAGCGGGGTCATCTCCCCAAGCAGCACCATCCACATACCACTGG
TCCTGGAGACCCAGGTCACTGGAGAACACAGATCCACGGTTTACATCTCAATCTTTGGGAGCCAGGACCC
CCCTTTGGTATGTCACTTAAAGAGCGCTGGAGAAGGCCCAGTTATCTACGTCCATCCCAATCAAGTGGAC
TTCGGGAATATCTACGTCCTAAAAGACTCTTCCAGGATTCTCAACCTATGCAACCAGTCCTTCATTCCCG
CATTTTTCCAGGCACACATGGCACACAAAAAATCCCTTTGGACGATTGAACCCAATGAAGGCATGGTTCC
TCCAGAAACTGATGTTCAACTGGCACTGACCGCCAACCTGAATGACACACTGACATTCAAGGACTGTGTT
ATTTTGGACATTGAAAATAGCAGTACCTATCGGATTCCTGTTCAGGCTTCCGGAACTGGTTCCACTATTG
TTTCAGATAAGCCCTTTGCTCCAGAACTCAATTTGGGGGCACATTTTAGGTAA

Translation (950 aa):
MESAGGFKLGMEPLSGGGVCEKKKLLKMTSRRLEESMGAVQMGLVNMFKGFQSKVLPPLSPKVVTEEEVN
RMLTPSEFLKEMSLTTEQRLAKTRLMCRPQIIELLDMGETTHQKFSGIDLDQALFQPFPSEIIFQNYTPC
EVYEVPLILRNNDKIPRLVKVVEESSPYFKVISPKDIGHKVAPGVPSIFRILFTPEENKDYAHTLTCVTE
REKFIVPIKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVG
ESMQLEVEFEPQSVGDHSGRLIVCYDTGEKVFVSLYGAAIDMNIRLDKNSLTIEKTYISLANQRTITIHN
RSNIIAHFLWKVFATQQEEDREKYRACDDLIKEEKDETDEFFEECITDPLLREHLSVLSRTFANQRRLVQ
GDSKLFFNNVFTVEPLEGDVWPNSSAEITVYFNPLEAKLYQQTIYCDILGREIRLPLRIKGEGMGPKIHF
NFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSTI
LGNFEEEFLVNVNGSPEPVKLTIRGCVIGPTFHFNVPALHFGDVSFGFPHTLICSLNNTSLIPMTYKLRI
PGDGLGHKSISYCEQHVDYKRPSWTKEEISSMKPKEFTISPDCGTIRPQGFAAIRVTLCSNTVQKYELAL
VVDVEGIGEEVLALLITARCVVPALHLVNTEVDFGHCFLKYPYEKTLQLANQDDLPGFYEVQPQVCEEVP
TVLFSSPTPSGVISPSSTIHIPLVLETQVTGEHRSTVYISIFGSQDPPLVCHLKSAGEGPVIYVHPNQVD
FGNIYVLKDSSRILNLCNQSFIPAFFQAHMAHKKSLWTIEPNEGMVPPETDVQLALTANLNDTLTFKDCV
ILDIENSSTYRIPVQASGTGSTIVSDKPFAPELNLGAHFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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