CCDS Report for Consensus CDS

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Report for CCDS53363.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
53363.1	Public	Homo sapiens	1	SEMA6C	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53363.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000368912.7	ENSP00000357908.3		Accepted	alive
		NCBI	NM_001178062.3	NP_001171533.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001171533.1	922	Q9H3T2-2	922	100%	0	0

Chromosomal Locations for CCDS 53363.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop
1	151132484	151133517
1	151133960	151134055
1	151134401	151134445
1	151134620	151134675
1	151134798	151134875
1	151135163	151135309
1	151135591	151135764
1	151136011	151136163
1	151136448	151136579
1	151136857	151137074
1	151137711	151137799
1	151138316	151138406
1	151138630	151138731
1	151139425	151139481
1	151139638	151139701
1	151139976	151140090
1	151142504	151142621

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTGCTGCTGCTGCTCTCACTTCCCCATACTCAGG CCGCCTTTCCCCAGGACCCCCTCCCTCTGTTGATCTCTGACCTTCAAGGTACTTCCCCATTATCCTGGTT TCGGGGCCTGGAGGATGATGCTGTGGCTGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAAC CGGACCTTGCTAGTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCGAAGAAGAAGGGGAGG GGCTGGTGCCCAACAAGTATCTAACATGGAGAAGCCAAGATGTGGAGAACTGTGCTGTACGGGGAAAGCT GACGGATGAGTGCTACAACTATATTCGTGTTCTTGTTCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGA ACGAACTCATTCAGCCCTGTGTGCCGCAGCTATGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAACTGA GTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCATCTTTGCAGAGCCACACTTTGT CCAGGCCTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGCGAGGTCTCTGTGGAGGATGCTCGGCTG GGGAGGGTGCAGTTCTCCCGCGTAGCCCGAGTATGTAAACGTGACATGGGCGGCTCGCCTCGGGCCTTGG ACCGCCACTGGACATCCTTCCTGAAGCTTCGGCTCAACTGCTCTGTCCCTGGGGACTCTACTTTCTATTT TGATGTTTTACAGGCCTTGACTGGGCCTGTGAACCTGCATGGCCGCTCTGCTCTCTTTGGGGTCTTCACC ACCCAGACCAATAGCATCCCTGGCTCTGCCGTCTGCGCCTTCTACCTGGATGAGATTGAGCGTGGGTTTG AGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAGAGTTCCCTC ACCCAGGCCAGGATCCTGTGCAGGAGTAGGGGGAGCTGCCTTGTTCTCCTCTTCCCGAGACCTCCCTGAT GATGTCCTGACCTTCATCAAGGCTCACCCGCTGCTGGACCCCGCTGTACCACCTGTCACCCATCAGCCTC TACTCACTCTCACTAGCAGGGCCCTACTGACCCAAGTAGCTGTGGATGGCATGGCTGGTCCCCACAGTAA CATCACAGTCATGTTCCTTGGCTCCAATGATGGGACAGTGCTGAAGGTGCTGACCCCAGGTGGGCGATCC GGGGGACCTGAGCCCATCCTCCTGGAAGAGATTGATGCCTACAGCCCTGCCCGGTGCAGTGGGAAGCGGA CAGCCCAAACAGCACGACGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCTTT TTCTGGCTGTATTGTCTACCTCCCTCTCAGCCGGTGTGCCCGGCATGGGGCCTGTCAGAGGAGCTGTTTG GCTTCTCAGGACCCATACTGTGGATGGCATAGCTCCAGGGGCTGTGTGGATATCAGGGGATCTGGTGGGA CTGATGTGGATCAGGCTGGGAACCAGGAATCCATGGAGCATGGTGACTGCCAAGATGGAGCTACTGGGAG TCAGTCTGGCCCTGGGGATTCTGCTTATGTGCTTCCGGGTCCTGGCCCTTCCCCTGGGACCCCCAGTCCT CCCAGTGATGCCCACCCCCGGCCCCAGTCTTCCACTCTTGGAGTTCACACTCGGGGCGTGCGCCGGGACC TGCCCCCAGCCTCGGCCTCCCGCTCCGTCCCCATCCCACTCCTCCTGGCCAGTGTGGCCGCAGCTTTTGC CCTGGGCGCCTCAGTCTCTGGCCTCCTGGTCTCCTGTGCTTGTCGCCGCGCCCACCGACGTCGGGGCAAG GACATCGAGACTCCGGGGCTCCCGCGCCCTCTCTCCCTCCGCAGTTTGGCCCGGCTCCACGGTGGGGGCC CAGAGCCCCCGCCGCCCTCCAAGGACGGGGACGCGGTGCAGACGCCGCAGCTCTACACCACCTTCCTGCC GCCTCCGGAGGGCGTGCCCCCGCCGGAGCTGGCCTGCCTGCCCACCCCCGAGTCCACGCCGGAGCTGCCG GTCAAGCACCTCCGCGCCGCCGGGGACCCCTGGGAGTGGAACCAGAACAGGAACAACGCCAAGGAGGGTC CGGGCCGCTCACGGGGCGGGCACGCGGCGGGCGGGCCCGCGCCCCGCGTGCTGGTGAGGCCACCGCCGCC CGGCTGTCCCGGGCAGGCCGTGGAAGTCACCACCCTGGAGGAACTGCTGCGCTACCTGCACGGCCCGCAG CCGCCCAGAAAGGGGGCCGAGCCCCCCGCCCCTTTAACCTCGCGGGCGCTCCCGCCGGAGCCCGCCCCCG CCCTCTTGGGCGGCCCCAGCCCCAGGCCCCACGAGTGCGCCTCGCCGCTGAGGCTGGACGTGCCCCCCGA GGGCAGGTGCGCCTCTGCCCCCGCCCGGCCCGCGCTCTCCGCCCCCGCTCCCCGGCTGGGCGTCGGCGGA GGCCGGAGGTTGCCTTTCTCCGGCCACCGGGCCCCCCCTGCCCTGCTCACTCGAGTCCCCTCGGGAGGTC CCTCCAGGTACTCCGGGGGTCCCGGGAAGCACCTCCTGTACCTGGGCCGGCCCGAGGGCTACCGGGGCCG CGCCCTGAAAAGGGTGGACGTCGAGAAGCCCCAGTTGTCCCTGAAGCCTCCCCTCGTCGGGCCCTCCTCC CGCCAGGCCGTCCCGAACGGCGGCCGTTTCAACTTTTAA
Translation (922 aa):
MPRAPHFMPLLLLLLLLSLPHTQAAFPQDPLPLLISDLQGTSPLSWFRGLEDDAVAAELGLDFQRFLTLN RTLLVAARDHVFSFDLQAEEEGEGLVPNKYLTWRSQDVENCAVRGKLTDECYNYIRVLVPWDSQTLLACG TNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSNVAIFAEPHFVQALEHGDHVYFFFREVSVEDARL GRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLHGRSALFGVFT TQTNSIPGSAVCAFYLDEIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSRDLPD DVLTFIKAHPLLDPAVPPVTHQPLLTLTSRALLTQVAVDGMAGPHSNITVMFLGSNDGTVLKVLTPGGRS GGPEPILLEEIDAYSPARCSGKRTAQTARRIIGLELDTEGHRLFVAFSGCIVYLPLSRCARHGACQRSCL ASQDPYCGWHSSRGCVDIRGSGGTDVDQAGNQESMEHGDCQDGATGSQSGPGDSAYVLPGPGPSPGTPSP PSDAHPRPQSSTLGVHTRGVRRDLPPASASRSVPIPLLLASVAAAFALGASVSGLLVSCACRRAHRRRGK DIETPGLPRPLSLRSLARLHGGGPEPPPPSKDGDAVQTPQLYTTFLPPPEGVPPPELACLPTPESTPELP VKHLRAAGDPWEWNQNRNNAKEGPGRSRGGHAAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQ PPRKGAEPPAPLTSRALPPEPAPALLGGPSPRPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGG GRRLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLLYLGRPEGYRGRALKRVDVEKPQLSLKPPLVGPSS RQAVPNGGRFNF

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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