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Report for CCDS55206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55206.1 Public Homo sapiens 8 SH2D4A 24 110 108 CCDS HistoryNCBI Gene:63898Re-query CCDS DB by CCDS ID:55206.1Re-query CCDS DB by GeneID:63898See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55206.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518040.5 ENSP00000429482.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518040.5Link to Ensembl Protein Viewer:ENSP00000429482.1Re-query CCDS DB by Nucleotide ID:ENST00000518040Re-query CCDS DB by Protein ID:ENSP00000429482
Original member Current member NCBI NM_001174160.2 NP_001167631.1 Accepted alive Link to Nucleotide Sequence:NM_001174160.2Link to Protein Sequence:NP_001167631.1Re-query CCDS DB by Nucleotide ID:NM_001174160Re-query CCDS DB by Protein ID:NP_001167631Link to BLAST:NP_001167631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167631.1 409 Q9H788-2 409 100% 0 0

Chromosomal Locations for CCDS 55206.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19313778 19313823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19332955 19333114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19334686 19334857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19357203 19357283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19361203 19361314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19364072 19364282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19373530 19373660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19393318 19393541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19394550 19394642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGTGGCGGGTGATCGAGCCACCCTGCCCAGGGGCGCCCAGCACTGAGAATGGCAAATCGGTTCATTGGA
AACTTGGAGCTGATAAGGAAGTCTGGGTATGGGTGATGGGCGAACACCATCTAGATAAACCCTATGATGT
GCTCTGTAATGAAATTATTGCTGAGAGGGCCCGGCTGAAAGCAGAACAGGAGGCAGAAGAGCCCAGAAAA
ACTCACTCTGAAGAATTCACCAATAGCTTGAAAACAAAATCACAGTACCATGATCTGCAGGCTCCGGATA
ACCAGCAGACTAAAGACATCTGGAAGAAAGTGGCAGAAAAGGAGGAACTGGAGCAAGGATCGAGGCCAGC
ACCAACCCTGGAAGAAGAGAAAATCCGATCACTCTCCAGTTCTTCAAGAAATATTCAACAAATGTTGGCA
GATTCAATCAATCGTATGAAGGCATATGCATTTCACCAGAAGAAAGAATCTATGAAGAAAAAACAAGATG
AAGAAATAAATCAAATAGAAGAAGAGAGAACGAAGCAGATTTGTAAGAGCTGGAAAGAAGACTCGGAATG
GCAGGCATCTCTGCGAAAATCCAAAGCAGCTGATGAGAAGAGACGCTCCTTGGCTAAACAAGCACGAGAA
GACTACAAGAGGTTATCCCTCGGGGCCCAGAAAGGAAGAGGCGGTGAGAGGCTGCAAAGCCCCTTGCGTG
TTCCGCAGAAACCAGAAAGACCTCCCCTTCCACCCAAGCCTCAGTTCCTAAACTCAGGGGCATATCCTCA
AAAACCTCTTAGAAATCAGGGAGTGGTGAGGACACTGTCCAGCTCTGCCCAAGAGGACATCATCCGGTGG
TTTAAAGAGGAGCAGCTACCACTTCGAGCGGGCTACCAGAAAACCTCAGACACCATAGCCCCCTGGTTCC
ATGGAATTCTCACACTCAAGAAAGCAAATGAACTTCTTCTGAGCACAGGCATGCCCGGCAGTTTTCTCAT
CCGAGTCAGTGAAAGGATCAAAGGCTATGCCCTGTCCTATCTGTCGGAGGACGGCTGTAAACATTTCCTC
ATCGATGCCTCTGCAGACGCCTACAGCTTCCTGGGCGTGGACCAGCTACAGCATGCCACCTTGGCGGATT
TGGTGGAATATCACAAGGAGGAACCCATCACTTCCCTGGGGAAGGAGCTCCTTCTCTATCCCTGTGGTCA
GCAGGACCAGCTGCCTGACTACCTGGAGCTGTTTGAGTGA

Translation (409 aa):
MWRVIEPPCPGAPSTENGKSVHWKLGADKEVWVWVMGEHHLDKPYDVLCNEIIAERARLKAEQEAEEPRK
THSEEFTNSLKTKSQYHDLQAPDNQQTKDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNIQQMLA
DSINRMKAYAFHQKKESMKKKQDEEINQIEEERTKQICKSWKEDSEWQASLRKSKAADEKRRSLAKQARE
DYKRLSLGAQKGRGGERLQSPLRVPQKPERPPLPPKPQFLNSGAYPQKPLRNQGVVRTLSSSAQEDIIRW
FKEEQLPLRAGYQKTSDTIAPWFHGILTLKKANELLLSTGMPGSFLIRVSERIKGYALSYLSEDGCKHFL
IDASADAYSFLGVDQLQHATLADLVEYHKEEPITSLGKELLLYPCGQQDQLPDYLELFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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