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Report for CCDS6550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6550.1 Public Homo sapiens 9 UBAP1 24 110 108 CCDS HistoryNCBI Gene:51271Re-query CCDS DB by CCDS ID:6550.1Re-query CCDS DB by GeneID:51271See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297661.9 ENSP00000297661.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297661.9Link to Ensembl Protein Viewer:ENSP00000297661.4Re-query CCDS DB by Nucleotide ID:ENST00000297661Re-query CCDS DB by Protein ID:ENSP00000297661
Original member Current member EBI ENST00000359544.2 ENSP00000352541.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359544.2Link to Ensembl Protein Viewer:ENSP00000352541.2Re-query CCDS DB by Nucleotide ID:ENST00000359544Re-query CCDS DB by Protein ID:ENSP00000352541
Original member Current member NCBI NM_001171203.3 NP_001164674.1 Accepted alive Link to Nucleotide Sequence:NM_001171203.3Link to Protein Sequence:NP_001164674.1Re-query CCDS DB by Nucleotide ID:NM_001171203Re-query CCDS DB by Protein ID:NP_001164674Link to BLAST:NP_001164674.1
Original member Current member NCBI NM_001171204.3 NP_001164675.1 Accepted alive Link to Nucleotide Sequence:NM_001171204.3Link to Protein Sequence:NP_001164675.1Re-query CCDS DB by Nucleotide ID:NM_001171204Re-query CCDS DB by Protein ID:NP_001164675Link to BLAST:NP_001164675.1
Original member Current member NCBI NM_016525.5 NP_057609.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016525.5Link to Protein Sequence:NP_057609.2Re-query CCDS DB by Nucleotide ID:NM_016525Re-query CCDS DB by Protein ID:NP_057609Link to BLAST:NP_057609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164674.1 502 Q9NZ09-1 502 100% 0 0
NP_001164675.1 502 Q9NZ09-1 502 100% 0 0
NP_057609.2 502 Q9NZ09-1 502 100% 0 0

Chromosomal Locations for CCDS 6550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34220915 34220948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34234216 34234340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34241185 34242108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34249779 34249961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34250658 34250759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34251392 34251532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCTTCTAAGAAGTTGGGTGCAGATTTTCATGGGACTTTCAGTTACCTTGATGATGTCCCATTTAAGA
CAGGAGACAAATTCAAAACACCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCA
GGTTGTCAGAGAAGTACAGTATGACTTCTCTTTGGAAAAGAAAACCATTGAGTGGGCTGAAGAGATTAAG
AAAATCGAAGAAGCCGAGCGGGAAGCAGAGTGCAAAATTGCGGAAGCAGAAGCTAAAGTGAATTCTAAGA
GTGGCCCAGAGGGCGATAGCAAAATGAGCTTCTCCAAGACTCACAGTACAGCCACAATGCCACCTCCTAT
TAACCCCATCCTCGCCAGCTTGCAGCACAACAGCATCCTCACACCAACTCGGGTCAGCAGTAGTGCCACG
AAACAGAAAGTTCTCAGCCCACCTCACATAAAGGCGGATTTCAATCTTGCTGACTTTGAGTGTGAAGAAG
ACCCATTTGATAATCTGGAGTTAAAAACTATTGATGAGAAGGAAGAGCTGAGAAATATTCTGGTAGGAAC
CACTGGACCCATTATGGCTCAGTTATTGGACAATAACTTGCCCAGGGGAGGCTCTGGGTCTGTGTTACAG
GATGAGGAGGTCCTGGCATCCTTGGAACGGGCAACCCTAGATTTCAAGCCTCTTCATAAACCCAATGGCT
TTATAACCTTACCACAGTTGGGCAACTGTGAAAAGATGTCACTGTCTTCCAAAGTGTCCCTCCCCCCTAT
ACCTGCAGTAAGCAATATCAAATCCCTGTCTTTCCCCAAACTTGACTCTGATGACAGCAATCAGAAGACA
GCCAAGCTGGCGAGCACTTTCCATAGCACATCCTGCCTCCGCAATGGCACGTTCCAGAATTCCCTAAAGC
CTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGCATCACACTCTTGGGCTTTCAGCTTTGAACTTGGA
CAGTGGCACAGAGATGCCAGCCCTGACATCCTCCCAGATGCCTTCCCTCTCTGTTTTGTCTGTGTGCACA
GAGGAATCATCACCTCCAAATACTGGTCCCACGGTCACCCCTCCTAATTTCTCAGTGTCACAAGTGCCCA
ACATGCCCAGCTGTCCCCAGGCCTATTCTGAACTGCAGATGCTGTCCCCCAGCGAGCGGCAGTGTGTGGA
GACGGTGGTCAACATGGGCTACTCGTACGAGTGTGTCCTCAGAGCCATGAAGAAGAAAGGAGAGAATATT
GAGCAGATTCTCGACTATCTCTTTGCACATGGACAGCTTTGTGAGAAGGGCTTCGACCCTCTTTTAGTGG
AAGAGGCTCTGGAAATGCACCAGTGTTCAGAAGAAAAGATGATGGAGTTTCTTCAGTTAATGAGCAAATT
TAAGGAGATGGGCTTTGAGCTGAAAGACATTAAGGAAGTTTTGCTATTACACAACAATGACCAGGACAAT
GCTTTGGAAGACCTCATGGCTCGGGCAGGAGCCAGCTGA

Translation (502 aa):
MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIK
KIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSAT
KQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQ
DEEVLASLERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKT
AKLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCT
EESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDN
ALEDLMARAGAS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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