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Report for CCDS49656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49656.1 Public Mus musculus 15 Apol6 23 108 98 CCDS HistoryNCBI Gene:71939Re-query CCDS DB by CCDS ID:49656.1Re-query CCDS DB by GeneID:71939See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127957.7 ENSMUSP00000118257.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127957.7Link to Ensembl Protein Viewer:ENSMUSP00000118257.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127957Re-query CCDS DB by Protein ID:ENSMUSP00000118257
Original member Current member NCBI NM_001163621.1 NP_001157093.1 Accepted alive Link to Nucleotide Sequence:NM_001163621.1Link to Protein Sequence:NP_001157093.1Re-query CCDS DB by Nucleotide ID:NM_001163621Re-query CCDS DB by Protein ID:NP_001157093Link to BLAST:NP_001157093.1

Chromosomal Locations for CCDS 49656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77047058 77047131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77050607 77051522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCTTTGGTGCAAACTCCAACCCCGAGCCATCAGACAGAGGAGGACTATGAGGCTGATGCTGAGTTGC
TAAGGGACAAGGATGACAGTCCTCTGGATGTTGAAGATGATGTTCTGTTTCTAAAACAGTTCCCGAGCTG
GAGAAAGAAGGAGAAGAAGCGCATTAGAACGCTCTATGCTATCGCAGACCACATTGACGAAAGCCACCAA
AAAGCTACCAAGATCAAAGTGGTGACTACCTCTGCATCAGTCGCCTCTGGAGTCCTGAGTCTCCTGGGTT
TGGCCCTGGCTACAACAACTGCAGGGGGAAGCCTGGTCCTCACTGCTGTTGGGCATGGTTTGGGGGCAGT
TGCCGGGGTCACCGAGATCGTGACCAATGTGAGGAAAAACTCTCGCAATAAAAGAGCCCTTGCTCAGGTC
AACAGCATCATGCCTAACAGCGACCAGGAGCTGGAGGGGGTCAAGGGAGAGAAGACGACCTTTGTCACAG
CTGCCGGTGACCTTGTCTACAAATGTGGGAACGCCTGGGATAATATCAAAAAGCACCTCCGAGCCCTCCA
GCTAACCAGAACCCAACCCCACGTCACCTCAGCTGCCAAAAAGCTCATGACTGCGGGCCACGTATCAGCT
CGAAGTGGCAGGCAGGTACAAAAGGCCTTTGGGGGCACAGCCCTGGCAATGACCAAAAATGCTCTGAGGA
TGGGACGTGCAGCTGCTGCCCTCTCCCTTGGCCAGGACATATATACTCTCTGGGAGGACTGGAAGGATCT
GAAGGCGGCAAACCCAACAGAGCTTGCAGAAGAGTTAAGAGCACGGGCTGCAGAACGGGAGCGGGTGTTA
GCTGAACACACCTGTCGCTACAGAAAGCTGCAGGTAAGGGTCGGGTTCTATCTTTTGTTGTTGTTGTTTG
TTTTTCTTCTGGAGCTGAGGACTGATCCCAGGGCCTTGTTCTTGCTAGGCAAGCACTCTACCACTGAGCT
AAATCTCTAA

Translation (329 aa):
MALVQTPTPSHQTEEDYEADAELLRDKDDSPLDVEDDVLFLKQFPSWRKKEKKRIRTLYAIADHIDESHQ
KATKIKVVTTSASVASGVLSLLGLALATTTAGGSLVLTAVGHGLGAVAGVTEIVTNVRKNSRNKRALAQV
NSIMPNSDQELEGVKGEKTTFVTAAGDLVYKCGNAWDNIKKHLRALQLTRTQPHVTSAAKKLMTAGHVSA
RSGRQVQKAFGGTALAMTKNALRMGRAAAALSLGQDIYTLWEDWKDLKAANPTELAEELRARAAERERVL
AEHTCRYRKLQVRVGFYLLLLLFVFLLELRTDPRALFLLGKHSTTELNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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