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Report for CCDS44567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44567.1 Public Homo sapiens 11 LMO2 24 110 108 CCDS HistoryNCBI Gene:4005Re-query CCDS DB by CCDS ID:44567.1Re-query CCDS DB by GeneID:4005See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395833.7 ENSP00000379175.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395833.7Link to Ensembl Protein Viewer:ENSP00000379175.3Re-query CCDS DB by Nucleotide ID:ENST00000395833Re-query CCDS DB by Protein ID:ENSP00000379175
Original member Current member NCBI NM_001142315.2 NP_001135787.1 Accepted alive Link to Nucleotide Sequence:NM_001142315.2Link to Protein Sequence:NP_001135787.1Re-query CCDS DB by Nucleotide ID:NM_001142315Re-query CCDS DB by Protein ID:NP_001135787Link to BLAST:NP_001135787.1
Original member Current member NCBI NM_001142316.2 NP_001135788.1 Accepted alive Link to Nucleotide Sequence:NM_001142316.2Link to Protein Sequence:NP_001135788.1Re-query CCDS DB by Nucleotide ID:NM_001142316Re-query CCDS DB by Protein ID:NP_001135788Link to BLAST:NP_001135788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135787.1 158 P25791-1 158 100% 0 0
NP_001135788.1 158 P25791-1 158 100% 0 0

Chromosomal Locations for CCDS 44567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 33859356 33859575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33864602 33864817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33869346 33869386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCTTCAGAGGAACCAGTGGATGAGGTGCTGCAGATCC
CCCCATCCCTGCTGACATGCGGCGGCTGCCAGCAGAACATTGGGGACCGCTACTTCCTGAAGGCCATCGA
CCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGTGAGGTGGGGCGGCGC
CTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAGGCTTTTTGGGCAAGACGGTCTCT
GCGCATCCTGTGACAAGCGGATTCGTGCCTATGAGATGACAATGCGGGTGAAAGACAAAGTGTATCACCT
GGAATGTTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGTAGGTGACAGATACCTCCTCATCAACTCT
GACATAGTGTGCGAACAGGACATCTACGAGTGGACTAAGATCAATGGGATGATATAG

Translation (158 aa):
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRR
LYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS
DIVCEQDIYEWTKINGMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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