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Report for CCDS29687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29687.1 Public Mus musculus 19 Gcnt1 23 108 98 CCDS HistoryNCBI Gene:14537Re-query CCDS DB by CCDS ID:29687.1Re-query CCDS DB by GeneID:14537See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 29687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169897.1 ENSMUSP00000127835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169897.1Link to Ensembl Protein Viewer:ENSMUSP00000127835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169897Re-query CCDS DB by Protein ID:ENSMUSP00000127835
Original member Current member EBI ENSMUST00000174236.7 ENSMUSP00000133935.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174236.7Link to Ensembl Protein Viewer:ENSMUSP00000133935.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000174236Re-query CCDS DB by Protein ID:ENSMUSP00000133935
Original member Current member EBI ENSMUST00000235184.1 ENSMUSP00000157544.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235184.1Link to Ensembl Protein Viewer:ENSMUSP00000157544.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235184Re-query CCDS DB by Protein ID:ENSMUSP00000157544
Original member Current member EBI ENSMUST00000236139.1 ENSMUSP00000157681.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236139.1Link to Ensembl Protein Viewer:ENSMUSP00000157681.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236139Re-query CCDS DB by Protein ID:ENSMUSP00000157681
Original member Current member NCBI NM_001136484.3 NP_001129956.3 Accepted alive Link to Nucleotide Sequence:NM_001136484.3Link to Protein Sequence:NP_001129956.3Re-query CCDS DB by Nucleotide ID:NM_001136484Re-query CCDS DB by Protein ID:NP_001129956Link to BLAST:NP_001129956.3
Original member Current member NCBI NM_010265.5 NP_034395.4 Accepted alive Link to Nucleotide Sequence:NM_010265.5Link to Protein Sequence:NP_034395.4Re-query CCDS DB by Nucleotide ID:NM_010265Re-query CCDS DB by Protein ID:NP_034395Link to BLAST:NP_034395.4
Original member Current member NCBI NM_173442.5 NP_775618.3 Accepted alive Link to Nucleotide Sequence:NM_173442.5Link to Protein Sequence:NP_775618.3Re-query CCDS DB by Nucleotide ID:NM_173442Re-query CCDS DB by Protein ID:NP_775618Link to BLAST:NP_775618.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129956.3 428 Q09324 428 100% 0 0
NP_034395.4 428 Q09324 428 100% 0 0
NP_775618.3 428 Q09324 428 100% 0 0

Chromosomal Locations for CCDS 29687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17329073 17330359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGCTGAGAAACTTGTTTCGGAGGAGACTTTTCTCTTGTCCTACAAAATACTACTTTATGCTCCTTGTCC
TCTCTTTAATTACCTTCTCTGTTTTAAGAATTCATCAGAAGCCTGAATTTTTCAGTGTCAGACACTTGGA
GCTGGCTGGAGATGATCCTTACAGCAATGTTAATTGCACCAAGATTTTACAGGGTGACCCAGAAGAAATC
CAGAAGGTGAAGCTTGAGATACTAACAGTGCAATTCAAGAAGCGCCCGAGGCGGACACCCCATGACTATA
TAAACATGACCCGTGACTGTGCCTCTTTCATCAGGACACGCAAATATATTGTGGAGCCCCTTACTAAAGA
AGAGGTAGGCTTTCCAATTGCATATTCCATTGTGGTTCATCATAAGATTGAAATGCTTGACAGGCTCCTG
AGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAGAAAAGCAGAGGAATCCTTTTTAG
CCGCGGTGCAGGGCATCGCATCCTGCTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTA
TGCGTCCTGGAGTCGGGTTAAGGCAGACCTCAACTGCATGAAGGACCTGTACAGAATGAATGCAAACTGG
AAGTACTTGATCAATCTCTGTGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCA
AGTGCTCCACAGGGGAAAACAACCTGGAAACTGAGAAGATGCCTCCCAACAAGGAAGAGAGATGGAAAAA
AAGATACACCGTTGTCGATGGGAAGCTGACCAACACTGGAATAGTCAAAGCACCGCCCCCACTGAAAACT
CCTCTCTTTTCAGGCAGTGCCTACTTCGTGGTCACTAGGGAATATGTAGGCTACGTGCTGGAAAATGAAA
ATATTCAAAAGTTGATGGAATGGGCACAGGACACATACAGCCCAGATGAGTTCCTCTGGGCCACCATCCA
AAGGATCCCAGAAGTCCCTGGTTCTTTCCCCTCAAGCAACAAGTATGACTTGTCAGACATGAATGCCATT
GCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGCCATGTTTCCAACGGTGCCCCTTATCCACCGTGCAGTG
GAGTCCACGTGCGCTCTGTGTGCGTCTTCGGAGCTGGTGACTTGAGCTGGATGCTGCGCCAACACCACCT
TTTTGCCAATAAGTTTGACATGGATGTCGACCCCTTTGCCATCCAGTGTTTGGATGAACATCTGAGGCAT
AAAGCCCTGGAGAACTTAGAACACTAA

Translation (428 aa):
MLRNLFRRRLFSCPTKYYFMLLVLSLITFSVLRIHQKPEFFSVRHLELAGDDPYSNVNCTKILQGDPEEI
QKVKLEILTVQFKKRPRRTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLL
RAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWSRVKADLNCMKDLYRMNANW
KYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYTVVDGKLTNTGIVKAPPPLKT
PLFSGSAYFVVTREYVGYVLENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAI
ARFVKWQYFEGHVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRH
KALENLEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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