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Report for CCDS47144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47144.1 Public Homo sapiens 4 SH3D19 24 110 108 CCDS HistoryNCBI Gene:152503Re-query CCDS DB by CCDS ID:47144.1Re-query CCDS DB by GeneID:152503See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47144.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409598.8 ENSP00000387030.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409598.8Link to Ensembl Protein Viewer:ENSP00000387030.4Re-query CCDS DB by Nucleotide ID:ENST00000409598Re-query CCDS DB by Protein ID:ENSP00000387030
Original member Current member EBI ENST00000514152.5 ENSP00000423449.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514152.5Link to Ensembl Protein Viewer:ENSP00000423449.1Re-query CCDS DB by Nucleotide ID:ENST00000514152Re-query CCDS DB by Protein ID:ENSP00000423449
Original member Current member NCBI NM_001128923.2 NP_001122395.1 Accepted alive Link to Nucleotide Sequence:NM_001128923.2Link to Protein Sequence:NP_001122395.1Re-query CCDS DB by Nucleotide ID:NM_001128923Re-query CCDS DB by Protein ID:NP_001122395Link to BLAST:NP_001122395.1
Original member Current member NCBI NM_001243349.2 NP_001230278.1 Accepted alive Link to Nucleotide Sequence:NM_001243349.2Link to Protein Sequence:NP_001230278.1Re-query CCDS DB by Nucleotide ID:NM_001243349Re-query CCDS DB by Protein ID:NP_001230278Link to BLAST:NP_001230278.1
Original member Current member NCBI NM_001378128.1 NP_001365057.1 Accepted alive Link to Nucleotide Sequence:NM_001378128.1Link to Protein Sequence:NP_001365057.1Re-query CCDS DB by Nucleotide ID:NM_001378128Re-query CCDS DB by Protein ID:NP_001365057Link to BLAST:NP_001365057.1
Original member Current member NCBI NM_001378129.1 NP_001365058.1 Accepted alive Link to Nucleotide Sequence:NM_001378129.1Link to Protein Sequence:NP_001365058.1Re-query CCDS DB by Nucleotide ID:NM_001378129Re-query CCDS DB by Protein ID:NP_001365058Link to BLAST:NP_001365058.1
Original member Current member NCBI NM_001378130.1 NP_001365059.1 Accepted alive Link to Nucleotide Sequence:NM_001378130.1Link to Protein Sequence:NP_001365059.1Re-query CCDS DB by Nucleotide ID:NM_001378130Re-query CCDS DB by Protein ID:NP_001365059Link to BLAST:NP_001365059.1
Original member Current member NCBI NM_001378131.1 NP_001365060.1 Accepted alive Link to Nucleotide Sequence:NM_001378131.1Link to Protein Sequence:NP_001365060.1Re-query CCDS DB by Nucleotide ID:NM_001378131Re-query CCDS DB by Protein ID:NP_001365060Link to BLAST:NP_001365060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122395.1 767 Q5HYK7-2 767 100% 0 0
NP_001230278.1 767 Q5HYK7-2 767 100% 0 0
NP_001365057.1 767 Q5HYK7-2 767 100% 0 0
NP_001365058.1 767 Q5HYK7-2 767 100% 0 0
NP_001365059.1 767 Q5HYK7-2 767 100% 0 0
NP_001365060.1 767 Q5HYK7-2 767 100% 0 0

Chromosomal Locations for CCDS 47144.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151122091 151122207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151127618 151127715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151128170 151128356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151132331 151132383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151133034 151133236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151135074 151135132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151137732 151137862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151139775 151139847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151143910 151144050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151147922 151148186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151149500 151149561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151159240 151159352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151165589 151165696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151174670 151175363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGAACATTATGAACACAGAACAAAGCCAAAATAGTATTGTTTCCAGAATTAAAGTGTTTGAGGGTCAGA
CAAACATAGAAACCTCAGGACTGCCCAAGAAACCAGAAATTACTCCACGTTCACTTCCTCCAAAGCCTAC
TGTTTCCTCAGGGAAACCTTCTGTAGCTCCCAAACCAGCTGCTAACAGAGCTTCTGGAGAGTGGGACTCT
GGGACTGAGAACAGACTCAAGGTGACCTCCAAGGAAGGACTCACCCCATACCCTCCCCTGCAAGAAGCGG
GAAGCATCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAAACCCTGGCCTTATACGAAGTGTTAATCC
TGAGATTCCGGGAAGAGGGCCCCTGGCTGAGAGCTCTGATAGTGGGAAGAAAGTGCCAACTCCTGCCCCG
CGGCCTTTGCTGCTGAAGAAATCTGTTTCCTCAGAAAACCCCACCTACCCTTCAGCTCCACTGAAACCTG
TCACTGTTCCTCCCCGACTCGCAGGGGCATCACAAGCCAAAGCATACAAGTCACTGGGAGAAGGGCCCCC
AGCCAACCCCCCAGTTCCAGTTCTGCAGAGCAAGCCCTTGGTGGACATCGATCTCATCAGCTTTGATGAT
GATGTTTTGCCCACCCCATCGGGGAACCTGGCTGAAGAATCTGTTGGTTCAGAGATGGTTCTAGATCCCT
TTCAGCTCCCTGCAAAAACAGAACCAATAAAAGAACGAGCAGTTCAACCAGCACCCACCAGGAAGCCCAC
TGTAATTCGAATTCCAGCCAAACCAGGAAAATGTTTACATGAGGATCCACAAAGTCCACCTCCTCTCCCT
GCTGAAAAACCTATTGGAAACACTTTCAGTACAGTATCTGGAAAGCTCAGTAATGTTGAGAGAACTAGAA
ACTTGGAATCCAACCACCCAGGTCAAACAGGAGGTTTTGTGCGAGTACCCCCAAGGTTGCCACCGAGACC
TGTGAATGGAAAAACCATTCCAACTCAACAGCCTCCAACCAAGGTGCCCCCTGAGAGACCACCTCCCCCA
AAGCTTTCTGCAACCAGAAGATCTAATAAGAAACTGCCTTTTAATCGATCCTCTTCTGACATGGATCTTC
AGAAAAAACAAAGTAACTTGGCAACTGGACTCTCAAAAGCCAAGAGTCAAGTTTTTAAAAATCAAGATCC
GGTGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGTAAATACATGCGTGGGGATGTACTTGTG
ATGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCAAAAGGGAGAAGACACTGGCAGAGTTCACCTGT
CTCAAATGAAGATTATCACTCCACTTGATGAACATCTTAGAAGCAGACCAAACGATCCAAGCCACGCTCA
GAAGCCTGTTGACAGTGGTGCTCCTCATGCTGTCGTTCTTCATGATTTCCCAGCAGAGCAAGTTGATGAT
TTGAACCTCACTTCTGGAGAAATTGTTTATCTTCTGGAGAAGATAGATACAGATTGGTACAGAGGGAACT
GTAGAAACCAGATTGGCATATTTCCTGCCAACTATGTCAAAGTGATTATTGATATCCCAGAAGGAGGAAA
TGGGAAAAGAGAATGTGTTTCATCTCATTGTGTTAAAGGCTCAAGATGTGTTGCTCGGTTTGAATATATT
GGAGAGCAGAAGGATGAGTTGAGTTTCTCAGAGGGAGAAATTATTATTCTTAAAGAGTATGTGAATGAGG
AATGGGCCAGAGGAGAAGTTCGAGGCAGAACTGGGATTTTCCCCCTGAACTTTGTGGAGCCTGTTGAGGA
TTATCCCACCTCTGGTGCAAATGTTTTAAGCACAAAGGTACCACTGAAAACCAAAAAAGAAGATTCTGGC
TCAAACTCTCAGGTTAACAGTCTTCCGGCAGAATGGTGTGAAGCTCTTCACAGTTTTACAGCAGAGACCA
GTGATGACTTATCATTCAAGAGGGGAGACCGGATCCAGATTCTGGAACGTCTGGATTCTGACTGGTGCAG
GGGCAGACTGCAGGACAGGGAGGGGATCTTCCCAGCAGTGTTTGTGAGGCCCTGCCCAGCTGAGGCAAAA
AGTATGTTGGCCATAGTACCGAAGGGGAGGAAGGCCAAAGCCTTATATGATTTCCGAGGGGAGAATGAAG
ATGAACTTTCCTTCAAGGCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGG
AGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAG

Translation (767 aa):
MNIMNTEQSQNSIVSRIKVFEGQTNIETSGLPKKPEITPRSLPPKPTVSSGKPSVAPKPAANRASGEWDS
GTENRLKVTSKEGLTPYPPLQEAGSIPVTKPELPKKPNPGLIRSVNPEIPGRGPLAESSDSGKKVPTPAP
RPLLLKKSVSSENPTYPSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPVPVLQSKPLVDIDLISFDD
DVLPTPSGNLAEESVGSEMVLDPFQLPAKTEPIKERAVQPAPTRKPTVIRIPAKPGKCLHEDPQSPPPLP
AEKPIGNTFSTVSGKLSNVERTRNLESNHPGQTGGFVRVPPRLPPRPVNGKTIPTQQPPTKVPPERPPPP
KLSATRRSNKKLPFNRSSSDMDLQKKQSNLATGLSKAKSQVFKNQDPVLPPRPKPGHPLYSKYMRGDVLV
MLKQTENNYLECQKGEDTGRVHLSQMKIITPLDEHLRSRPNDPSHAQKPVDSGAPHAVVLHDFPAEQVDD
LNLTSGEIVYLLEKIDTDWYRGNCRNQIGIFPANYVKVIIDIPEGGNGKRECVSSHCVKGSRCVARFEYI
GEQKDELSFSEGEIIILKEYVNEEWARGEVRGRTGIFPLNFVEPVEDYPTSGANVLSTKVPLKTKKEDSG
SNSQVNSLPAEWCEALHSFTAETSDDLSFKRGDRIQILERLDSDWCRGRLQDREGIFPAVFVRPCPAEAK
SMLAIVPKGRKAKALYDFRGENEDELSFKAGDIITELESVDDDWMSGELMGKSGIFPKNYIQFLQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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