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Report for CCDS44040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44040.1 Public Homo sapiens 1 TMEM240 24 110 108 CCDS HistoryNCBI Gene:339453Re-query CCDS DB by CCDS ID:44040.1Re-query CCDS DB by GeneID:339453See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378733.9 ENSP00000368007.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378733.9Link to Ensembl Protein Viewer:ENSP00000368007.4Re-query CCDS DB by Nucleotide ID:ENST00000378733Re-query CCDS DB by Protein ID:ENSP00000368007
Original member Current member EBI ENST00000425828.1 ENSP00000400311.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425828.1Link to Ensembl Protein Viewer:ENSP00000400311.1Re-query CCDS DB by Nucleotide ID:ENST00000425828Re-query CCDS DB by Protein ID:ENSP00000400311
Original member Current member NCBI NM_001114748.2 NP_001108220.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114748.2Link to Protein Sequence:NP_001108220.1Re-query CCDS DB by Nucleotide ID:NM_001114748Re-query CCDS DB by Protein ID:NP_001108220Link to BLAST:NP_001108220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108220.1 173 Q5SV17 173 100% 0 0

Chromosomal Locations for CCDS 44040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1535359 1535507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1535589 1535797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1539684 1539790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1540290 1540346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGTCCATGAGCGCGAACACCATGATCTTCATGATTCTGGGGGCGTCGGTCGTGATGGCCATCGCGTGCT
TGATGGACATGAACGCGCTGCTGGACCGATTCCACAACTACATCCTCCCGCACCTGCGGGGCGAGGACCG
CGTCTGCCACTGCAACTGTGGCCGGCACCATATCCACTACGTGATCCCGTACGACGGGGACCAGTCGGTG
GTGGACGCCTCCGAGAACTACTTTGTGACGGACAGTGTGACCAAGCAGGAGATCGACCTCATGCTGGGGC
TGCTGCTGGGCTTTTGCATCAGCTGGTTCCTGGTGTGGATGGACGGCGTCCTGCACTGCGCCGTGCGCGC
CTGGAGAGCCGGACGGCGCTACGATGGCTCGTGGACCTGGCTGCCCAAGCTGTGCAGCCTGCGGGAGCTG
GGCCGGCGGCCGCACAGGCCCTTCGAGGAGGCCGCCGGGAACATGGTACACGTGAAGCAGAAACTCTACC
ACAATGGCCACCCCAGCCCGCGGCACCTGTGA

Translation (173 aa):
MSMSANTMIFMILGASVVMAIACLMDMNALLDRFHNYILPHLRGEDRVCHCNCGRHHIHYVIPYDGDQSV
VDASENYFVTDSVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVRAWRAGRRYDGSWTWLPKLCSLREL
GRRPHRPFEEAAGNMVHVKQKLYHNGHPSPRHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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