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Report for CCDS50455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50455.1 Public Mus musculus 19 Ldb1 23 108 98 CCDS HistoryNCBI Gene:16825Re-query CCDS DB by CCDS ID:50455.1Re-query CCDS DB by GeneID:16825See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156585.8 ENSMUSP00000118546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156585.8Link to Ensembl Protein Viewer:ENSMUSP00000118546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156585Re-query CCDS DB by Protein ID:ENSMUSP00000118546
Original member Current member EBI ENSMUST00000185355.6 ENSMUSP00000139562.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185355.6Link to Ensembl Protein Viewer:ENSMUSP00000139562.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185355Re-query CCDS DB by Protein ID:ENSMUSP00000139562
Original member NCBI NM_001113408.2 NP_001106879.1 Updated not alive Link to Nucleotide Sequence:NM_001113408.2Link to Protein Sequence:NP_001106879.1Re-query CCDS DB by Nucleotide ID:NM_001113408Re-query CCDS DB by Protein ID:NP_001106879
Current member NCBI NM_001113408.3 NP_001106879.1 Accepted alive Link to Nucleotide Sequence:NM_001113408.3Link to Protein Sequence:NP_001106879.1Re-query CCDS DB by Nucleotide ID:NM_001113408Re-query CCDS DB by Protein ID:NP_001106879Link to BLAST:NP_001106879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106879.1 411 P70662-1 411 100% 0 0

Chromosomal Locations for CCDS 50455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46033111 46033341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46034032 46034180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46034389 46034512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46034611 46034694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46034824 46034946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46035421 46035593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46035735 46035837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46035924 46035999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46036107 46036151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46036263 46036365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46044830 46044854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGTCAGTGGGCTGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCC
CGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGGCCCAACTCCCAT
GTACCCACCTACATACCTGGAGCCTGGGATCGGGAGGCACACACCATATGGTAACCAAACCGACTATAGA
ATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGGAGTGTGACAATCTCTGGTGGGATGCTTTCA
CAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATA
TACCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTAC
TACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCA
TGGTGACCCAGCACGGCAAACCCATGTTTACCCAGGTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCAT
GTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGA
AGTATCCTGGCCATGCACGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTG
GGCTGTCCAATTCCACTCTCAACTACCTCCGACTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTC
CCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGA
ATGGTAGCGCCTCCCGCGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGG
GTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCAC
CTTCGCTCTCTCCAGCCAGGTACCTGATGTGATGGTGGTGGGGGAGCCCACCCTGATGGGCGGGGAGTTC
GGGGACGAGGACGAGAGGCTCATCACCCGGCTGGAGAACACCCAGTTTGACGCGGCCAACGGCATTGACG
ACGAGGACAGCTTTAACAACTCCCCCGCACTGGGCGCCAACAGCCCCTGGAACAGCAAGCCTCCATCCAG
CCAAGAGAGCAAATCGGAGAATCCCACGTCACAGGCTTCCCAGTGA

Translation (411 aa):
MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYR
IFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELY
YVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPR
SILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQR
MVAPPAEPARQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEF
GDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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