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Report for CCDS38777.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
38777.1 |
Public |
Mus musculus |
4 |
Akna |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:100182](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:38777.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:100182](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 38777.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000035724.4 |
ENSMUSP00000041614.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000035724.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000041614.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000035724](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000041614](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001045514.3 |
NP_001038979.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001045514.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001038979.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001045514](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001038979](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001045514.4 |
NP_001038979.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001045514.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001038979.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001045514](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001038979](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001038979.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001305432.1 |
NP_001292361.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001305432.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001292361.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001305432](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001292361](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001305432.2 |
NP_001292361.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001305432.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001292361.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001305432](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001292361](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001292361.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 38777.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4215 nt): ATGGCCAGCTCAGGGGCAAAGGCACAATGGGTTGGGCCAAGCCTGGGGCAAGGGCCCCGAAGGCGGCGCT GGGCTTGGGCTGAGGAACAAGATACAGATGGAAGAAGAGACCAGGGCTGGGGAAACAGCCAGTCTCTTCC CGAAGCCCCCAGTCCTGAGCTCCTAGAGGACTTCCGTCGGGCACAGGAGCACCTGCCACCCCTGGAGTGG GACCCAGACATGCAGGACTCCGAAGAGTCTTCTGGAGAAGAGACCGAAGCTGACGATGCAAGCAGCCCAG AGGGTTCCACCGTGCCTCTGCCCTGGCTCTCCAGGAGCAACCAACAGCTGGACATGTCTGAAGAGGAGCT GGATGAGGCCTCTGGGAGGCCTGAGGTAGACTTAGCTGGAGAGAGTTGTACGGAGCTTGAGTGTGAAGAC CAGGGAGATTCCAGCCCTCCACCTCCAGGACAGGGGCCAGCCAAAGGCTGGGTCACCTTTATCAAACAAG GCAGTAACTACAGACCTTCAGAGCATCTCGAGGCCCAGCCATCTGTTGAACATAGCCGCACAAAGTCTTG GAGCAGTGGAACTGTGAGCCTCCGTCAACCTAGTGACAGCCTTGGTTCTACCTGGGAAGGAGATACCGAA GTCCCTCAGCCTTCCATCTTGCCCAAAGCCCTGCCACAGAGTCCGTGCCACAACTTTCCACACCCAGGTG ACAGAAATGGAGGTGACGTTGCTCCGGCAACACCCACAGAATTCCGGGACTCCTTAGCAGCGCCAGCCCA GAATGCCGAGTGCTCTGCAGGCACGTGGGGGGAAGAAACCACCAGCCTACCCAGCTCTCGGCCTGAGGAC CAAACCTGGAAGAGGACTAAGACATCACCTAAGCCACTGCCCTCCCGGTTTACTGGTTCTGTCAGCCCCC TGAGTACTCGGCTTGGGGCAATAAAGAAAGTTGTGCCCCAGCACAAGCAGGGAGCCACTCTGGCTGGTCA CTCTTCTTCACAAGCTCCCAAGTATGGCAGGGGGCGCCGCCTGAACTACCCACTCCCCGACTTCTCCAAG GTGGGGCCCCGGGTGAGGTTTCCCAAAGATGAGAACTACCGACCCCCGAAGTCCAGAGGCCACAACAGGC AACAAGGCTCTACCAGACCCCTCATCTTCAAGTCGCCAGCTGAGATTGTTCGGGATGTACTGTTGAGTAG TGGAGAGGCGTCCCTGGCCAAGGAATCTTCTCTTGCTCACACCATCACCAGGGTGCCCCAGGAGTTCCAG ACACCCGAACAAGCCACTGAGCTAGTTCATCAGCTCCAGGAGGACTATCACAAGCTCCTCACCAAGTATG CGGAGGCTGAGAACACTATCGACCAACTTCGCCTTGGGGCCAAGGTGCACCTGTATTCAGACCCACCACA GCCCAGTCAGAGCTTCTGCTCGGGGTCAATGCCACAAGGAAGCAAGGTCTTATCCTTCTCTATCCCGCAA CCCAGAGTAGCAGAGTGGTGGCCTGACCCTGCCCAGGATCCACAGGCCTCTGAGGCCACAGGGTGGCCGT TCCCACGAACAGACCTGAGTCCCTCCTCGTCCCCCGGCGTGGCCACTCCAGGGCGGCTTCCTCAGAGCCA GGGCATTGCCACAGACCAGCCCTCCACAGGACAGACCCAGGCACTGACCTCTCAGGCCAGCCGGCTCCTG GCCAAGGTGCAGTCCTTCGAGGAACTGGTACTGGCTGGACACCTCCCACCTCAGGACCAAATCAAGAGCT TGGAGCAACTGAGGGCAGCCCACATGGCCCTAGAGGCAGAGTACCTGCAGGCCTGCAGAGAAGAGCTCCT GGACCCTCAGCTTGATGCCTCTCAGGGGAGTCCCAGGACCCTCAACCTCTGCAGGGAGCTAGAAGCAGAG ATATACCACCTGGGACAGCGCCTGGAAGAGCTACAGGACCATATGGACCAGACCCAAAGAGAGACAGAGC CATGTAGGCCAGACCTGCAAGACAGCACCCCAACCATGTCCTTTCTGCCCCAGTCAGCTCATCTGTCCAT GCCTTCAGGACCTGTCTCCTTGCCAGATGGCCAAACCTACCAGGAGCCTGCCACCACCACCACCACCTCC CCTGGAAGCTCTTGCACGCTCCCCATCAACAAGAAGTTAAGCCTGAGCATCAAAACTGAGGAAAGCCCAA GAGGTCTCCCGGTCCCACTCAGGGACAGGACGCTTCAGGTGGAGCAGGACTTCCATGGCCTTCTGGAGAG ATACCTCAGCGTTAAATCCCTCCCTGAAGCCTTGAGGGATGAAGATGAGGATGACCTGGAGGAGGAGGAA GAGGAGCAGGACCATCAAGGCCCCTTGGAAGTTGATAGTCCAGCCACAGCTCCAGGGAAAACAGAAGCCG TGAGGGTACCACCAGGAGAGCGCCCAACACAGGCTGAGGAAAGCCATAGGGATGCTACCCAGGAGGATGA GGAACAGATGGGACCTATGAAGTCACCAGACTTCCGGCCATCCATGGCCAGAGATACGTACACACCAGTC CTGGATACAGCTGAAGTGGCTCAACGGGGCACCAAAGCCATGGTGTCACATCAGAGCAGTCTGACCAGCC TGGAAGAGAGCAGGCCCTCAGAGCTCCTTCCTCGAAAAGCCCTGCTTCGGGCTGGTGGGCCCCACACTGA GGAGCCCTGGATGGTGTCACCAGAGACAGACAGTGGCTTCGTGGGCTCAGAAACCAGTATAGTGTCACCC TTCACCCAGACCCCAGAGCACCGGCTCTCCCATGTCAGCACTTCAGGACCATCAGCTCAACACCTCACTG CCTCTGTGCCTGGTGATAGAACCTCCCATCCCAAGGCCAGGGGTCTCATGGTTCCCAGAAGAGCCACTGA GACTGGCATACCCAGAAGCCGAACCCAGCAGCATTTCTCCAGCCTGAGCTCTCCCGGGAGAGGGGCACAG AGCTGCCACCTAGAGGAGACATCAGTGGCTAAAATAGCGGTTCCCAGGTCTGAGTTCAAGAGACAGAAGC AGATTTCCAAACAGCTCCTTCCCAGTGGAAGAACCAGCCCCGACTCTGCCCCAGCTCCCACAGCTGCCTC CACGCCCCATGGATCAGCAGAGAGCACTGCCAACCTCCTCCTCAACAGGACAGAGCGCGACCAGGCCATC AAGGATCTGCAGGCGGAGGTGTCACGGCTCCGCCTTCAACTGGAGGACAGCCTGCACCGGCCACACCCAG ACGGCCCAGCCTGTGTAGCTTCTGCTTTCAACCACTCCACCCAGACCCAGGAAAAGCTGGGTTCCTCACC CTCCTGGGGCCCCCACTATGGCAGTAAATCCACAGAGAGGCTGTCTAGGGAGCCTAATGGTGTAGAGCCA GCTGAGCCAATGGGAAGACGTCGAGCCAGGTCCTCTTCGGTGCCTCGGGATGTACCCAGACTGTACCTAA GTTCTGAATCGGAGTCGCCTGCCCCTCGGCTCTCATCTGAGAAGAGCAGGACCTTTGAGGAGCACCCCGA GGCTGCACAGTGGGGGACAAGACCACAGAGCAGCTCGAAGCGGAGGGAAAGAGTTTCCTTCCGGGGTCAA TACACAGGCCAGGAGTACCACATTCTATCCCCAAAGGCCATCCTGAAGGACAGTGGCACACCGTCCTGTC CCCACTGCCATCCCATTAGGACCCAGGACACAGGCAGTGCTGTCTCTAGAGACACCACACGGGGCTCATC TGCCGCTGACACCCTCCGCTGTGCCCTGTGTGGTGAAGTCAAGTCCTCTGCAGAAGCAGATGGCTCCAGC TCAGGTCCCTCTGAGAAGAACACCCCCAAAAAGCCTTCCACCCCCATCCTCAAACGGAAGAACAGGCAGA CGGGCTCGCCAGTACGAATGGCCCCTGGACTCTGGTACCTGGCTGCTGCGCCCCCAGCCCCAGCCCCACC GGCTTTGGCCTACATCTCCTCAGCTCCCATTATGCCTTATCTACCACCCACTGTGTACTATGCAGCCCCA GCACCTACCTCAGCCCAGACAGCTTCCCCGCAGCCTGCTCGGGGACCTCGGAGAACCCGGCACTCAGTCC AACTGGGTCTGAATGACCTGGAGGAGCTGCAGGCCGCACTCAGAGAGGCTGCACAGGCCGCCGAGAACGT TCGCTCCACCACCCGCCAGCTGAGCCGCTCCCTGTCTGCGGACCTGCGCCATGCCCGTAGCCTGCGAGGC TCCTGCCTTTTCTGA
Translation (1404 aa): MASSGAKAQWVGPSLGQGPRRRRWAWAEEQDTDGRRDQGWGNSQSLPEAPSPELLEDFRRAQEHLPPLEW DPDMQDSEESSGEETEADDASSPEGSTVPLPWLSRSNQQLDMSEEELDEASGRPEVDLAGESCTELECED QGDSSPPPPGQGPAKGWVTFIKQGSNYRPSEHLEAQPSVEHSRTKSWSSGTVSLRQPSDSLGSTWEGDTE VPQPSILPKALPQSPCHNFPHPGDRNGGDVAPATPTEFRDSLAAPAQNAECSAGTWGEETTSLPSSRPED QTWKRTKTSPKPLPSRFTGSVSPLSTRLGAIKKVVPQHKQGATLAGHSSSQAPKYGRGRRLNYPLPDFSK VGPRVRFPKDENYRPPKSRGHNRQQGSTRPLIFKSPAEIVRDVLLSSGEASLAKESSLAHTITRVPQEFQ TPEQATELVHQLQEDYHKLLTKYAEAENTIDQLRLGAKVHLYSDPPQPSQSFCSGSMPQGSKVLSFSIPQ PRVAEWWPDPAQDPQASEATGWPFPRTDLSPSSSPGVATPGRLPQSQGIATDQPSTGQTQALTSQASRLL AKVQSFEELVLAGHLPPQDQIKSLEQLRAAHMALEAEYLQACREELLDPQLDASQGSPRTLNLCRELEAE IYHLGQRLEELQDHMDQTQRETEPCRPDLQDSTPTMSFLPQSAHLSMPSGPVSLPDGQTYQEPATTTTTS PGSSCTLPINKKLSLSIKTEESPRGLPVPLRDRTLQVEQDFHGLLERYLSVKSLPEALRDEDEDDLEEEE EEQDHQGPLEVDSPATAPGKTEAVRVPPGERPTQAEESHRDATQEDEEQMGPMKSPDFRPSMARDTYTPV LDTAEVAQRGTKAMVSHQSSLTSLEESRPSELLPRKALLRAGGPHTEEPWMVSPETDSGFVGSETSIVSP FTQTPEHRLSHVSTSGPSAQHLTASVPGDRTSHPKARGLMVPRRATETGIPRSRTQQHFSSLSSPGRGAQ SCHLEETSVAKIAVPRSEFKRQKQISKQLLPSGRTSPDSAPAPTAASTPHGSAESTANLLLNRTERDQAI KDLQAEVSRLRLQLEDSLHRPHPDGPACVASAFNHSTQTQEKLGSSPSWGPHYGSKSTERLSREPNGVEP AEPMGRRRARSSSVPRDVPRLYLSSESESPAPRLSSEKSRTFEEHPEAAQWGTRPQSSSKRRERVSFRGQ YTGQEYHILSPKAILKDSGTPSCPHCHPIRTQDTGSAVSRDTTRGSSAADTLRCALCGEVKSSAEADGSS SGPSEKNTPKKPSTPILKRKNRQTGSPVRMAPGLWYLAAAPPAPAPPALAYISSAPIMPYLPPTVYYAAP APTSAQTASPQPARGPRRTRHSVQLGLNDLEELQAALREAAQAAENVRSTTRQLSRSLSADLRHARSLRG SCLF
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