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Report for CCDS14159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14159.1 Public Homo sapiens X GEMIN8 24 110 108 CCDS HistoryNCBI Gene:54960Re-query CCDS DB by CCDS ID:14159.1Re-query CCDS DB by GeneID:54960See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380523.8 ENSP00000369895.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380523.8Link to Ensembl Protein Viewer:ENSP00000369895.4Re-query CCDS DB by Nucleotide ID:ENST00000380523Re-query CCDS DB by Protein ID:ENSP00000369895
Original member Current member EBI ENST00000398355.7 ENSP00000381398.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398355.7Link to Ensembl Protein Viewer:ENSP00000381398.3Re-query CCDS DB by Nucleotide ID:ENST00000398355Re-query CCDS DB by Protein ID:ENSP00000381398
Original member Current member EBI ENST00000477386.2 ENSP00000505279.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477386.2Link to Ensembl Protein Viewer:ENSP00000505279.1Re-query CCDS DB by Nucleotide ID:ENST00000477386Re-query CCDS DB by Protein ID:ENSP00000505279
Original member Current member EBI ENST00000680255.1 ENSP00000505429.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000680255.1Link to Ensembl Protein Viewer:ENSP00000505429.1Re-query CCDS DB by Nucleotide ID:ENST00000680255Re-query CCDS DB by Protein ID:ENSP00000505429
Original member Current member NCBI NM_001042479.2 NP_001035944.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042479.2Link to Protein Sequence:NP_001035944.1Re-query CCDS DB by Nucleotide ID:NM_001042479Re-query CCDS DB by Protein ID:NP_001035944Link to BLAST:NP_001035944.1
Original member Current member NCBI NM_001042480.2 NP_001035945.1 Accepted alive Link to Nucleotide Sequence:NM_001042480.2Link to Protein Sequence:NP_001035945.1Re-query CCDS DB by Nucleotide ID:NM_001042480Re-query CCDS DB by Protein ID:NP_001035945Link to BLAST:NP_001035945.1
Original member Current member NCBI NM_017856.3 NP_060326.1 Accepted alive Link to Nucleotide Sequence:NM_017856.3Link to Protein Sequence:NP_060326.1Re-query CCDS DB by Nucleotide ID:NM_017856Re-query CCDS DB by Protein ID:NP_060326Link to BLAST:NP_060326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035944.1 242 Q9NWZ8 242 100% 0 0
NP_001035945.1 242 Q9NWZ8 242 100% 0 0
NP_060326.1 242 Q9NWZ8 242 100% 0 0

Chromosomal Locations for CCDS 14159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 14008913 14009169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14020078 14020534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14021464 14021478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCAGCGGTAAAGGCATCAACATCGAAAGCTACCAGGCCTTGGTATTCTCATCCGGTATATGCAAGAT
ACTGGCAACATTATCATCAAGCAATGGCTTGGATGCAAAGCCATCACAATGCCTACAGGAAGGCCGTGGA
ATCCTGTTTCAATCTTCCATGGTACTTACCTTCTGCGCTTCTTCCCCAAAGCTCTTACGATAATGAGGCT
GCGTATCCTCAGTCCTTCTATGACCATCATGTGGCCTGGCAGGACTACCCCTGCAGTTCTTCACATTTCA
GAAGATCTGGGCAGCATCCACGTTACAGCAGTAGGATCCAGGCATCCACAAAAGAAGACCAAGCTTTGTC
CAAAGAGGAAGAGATGGAGACTGAGTCAGATGCAGAGGTAGAATGTGACCTGAGCAATATGGAAATCACT
GAAGAGCTCCGCCAGTACTTTGCAGAGACCGAGAGGCATAGAGAAGAACGACGGCGGCAGCAGCAGCTGG
ATGCAGAGCGCCTGGACAGCTATGTGAACGCTGACCACGACCTGTACTGCAACACCCGCCGGTCGGTAGA
AGCCCCAACTGAGAGGCCTGGTGAGCGGCGCCAGGCCGAGATGAAGCGTTTGTACGGGGACAGTGCTGCC
AAGATCCAAGCCATGGAGGCCGCGGTGCAGCTGAGCTTTGACAAGCACTGTGACCGAAAGCAGCCCAAGT
ACTGGCCGGTCATCCCCCTGAAGTTCTGA

Translation (242 aa):
MAAVKASTSKATRPWYSHPVYARYWQHYHQAMAWMQSHHNAYRKAVESCFNLPWYLPSALLPQSSYDNEA
AYPQSFYDHHVAWQDYPCSSSHFRRSGQHPRYSSRIQASTKEDQALSKEEEMETESDAEVECDLSNMEIT
EELRQYFAETERHREERRRQQQLDAERLDSYVNADHDLYCNTRRSVEAPTERPGERRQAEMKRLYGDSAA
KIQAMEAAVQLSFDKHCDRKQPKYWPVIPLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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