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Report for CCDS35748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35748.1 Public Mus musculus 1 Klhl20 23 108 98 CCDS HistoryNCBI Gene:226541Re-query CCDS DB by CCDS ID:35748.1Re-query CCDS DB by GeneID:226541See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111611.7 ENSMUSP00000107238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111611.7Link to Ensembl Protein Viewer:ENSMUSP00000107238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111611Re-query CCDS DB by Protein ID:ENSMUSP00000107238
Original member Current member EBI ENSMUST00000117467.6 ENSMUSP00000114044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117467.6Link to Ensembl Protein Viewer:ENSMUSP00000114044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117467Re-query CCDS DB by Protein ID:ENSMUSP00000114044
Original member Current member NCBI NM_001039482.1 NP_001034571.1 Accepted alive Link to Nucleotide Sequence:NM_001039482.1Link to Protein Sequence:NP_001034571.1Re-query CCDS DB by Nucleotide ID:NM_001039482Re-query CCDS DB by Protein ID:NP_001034571Link to BLAST:NP_001034571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034571.1 604 Q8VCK5 604 100% 0 0

Chromosomal Locations for CCDS 35748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161090427 161090511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161093681 161093787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161095529 161095737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161098263 161098396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161099142 161099285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161101451 161101634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161102979 161103094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161105401 161105495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161106707 161106865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161109222 161109795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161130389 161130396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGCGCAGGTGTACCAACATTCGACCAGGAGAGACTGGAATGGATGTAACAAGCCGCTGCACCCTTGGAG
ACCCCAACAAGCTGCCAGAAGGGGTTCCCCAACCTGCTCGCATGCCCTATATTTCAGACAAGCACCCTCG
GCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGATGTGGTGCTAGTTGTGGGC
GCTAAGAAGATATATGCCCACCGCGTCATCCTGTCAGCCTGCAGCCCCTACTTCCGAGCAATGTTTACAG
GGGAGCTGGCAGAAAGCCGGCAGACAGAAGTAGTGATCCGAGACATAGATGAGAGGGCCATGGAGCTCCT
GATTGACTTTGCATATACCTCCCAGATCACTGTGGAAGAGGGCAATGTTCAGACTCTCTTGCCTGCTGCT
TGCCTCCTCCAGCTGGCAGAAATACAGGAAGCCTGCTGTGAATTCTTAAAGAGACAATTAGATCCTTCTA
ATTGTCTGGGCATTCGGGCTTTTGCTGACACACATTCTTGCCGTGAGTTGCTAAGGATTGCAGACAAGTT
CACCCAACATAACTTTCAAGAGGTAATGGAGAGTGAAGAATTCATGTTACTTCCGGCCAACCAACTCATT
GACATAATATCTAGTGATGAGCTCAATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTGGG
TCAAATACAGTATTCAGGAAAGACGGCCTCAGTTACCCCAGGTGCTGCAACATGTTCGCCTGCCTTTGCT
TAGTCCCAAGTTCCTGGTGGGCACCGTAGGCTCTGACCCCCTCATTAAAAGTGATGAAGAATGCAGAGAC
TTGGTAGATGAGGCTAAAAACTACCTCCTGTTGCCTCAAGAACGACCACTAATGCAAGGGCCAAGGACAA
GACCACGGAAACCTATCCGATGCGGAGAAGTACTCTTTGCAGTTGGTGGTTGGTGCAGTGGAGATGCCAT
TTCCAGTGTTGAACGCTATGACCCCCAGACCAATGAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGA
TGTGGAGTCGGGGTCAGTGTTCTTGATGACCTGTTATATGCAGTAGGCGGCCATGATGGATCCTCATATC
TCAATAGTGTTGAAAGATATGACCCCAAAACTAACCAATGGAGCAGCGATGTGGCCCCTACAAGCACCTG
CAGGACAAGCGTTGGTGTGGCAGTCCTTGGAGGTTTTCTCTATGCTGTGGGTGGACAGGATGGTGTCTCT
TGCCTCAATATAGTTGAGAGGTATGATCCAAAGGAGAACAAGTGGACCCGGGTGGCTTCAATGAGCACTA
GAAGGCTAGGGGTGGCTGTCGCCGTGTTGGGAGGGTTCTTATACGCTGTTGGTGGCTCAGATGGAACATC
TCCACTTAACACAGTGGAGCGCTACAATCCTCAGGAAAACAGATGGCACACCATAGCGCCTATGGGGACC
CGAAGAAAACACCTAGGCTGTGCGGTGTACCAGGACATGATCTATGCAGTGGGAGGGAGAGACGACACTA
CAGAGCTTAGCAGTGCTGAGAGATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGTGGCCATGACATC
CCGCAGGAGTGGAGTCGGCCTGGCCGTGGTCAATGGACAGCTTATGGCAGTGGGGGGCTTTGATGGCACA
ACATACTTGAAGACCATTGAAGTTTTTGACCCAGATGCCAATACGTGGAGGTTATACGGAGGGATGAATT
ACCGTCGGCTAGGAGGTGGTGTAGGAGTTATTAAAATGACACATTGTGAATCCCATATATGGTGA

Translation (604 aa):
MRRCTNIRPGETGMDVTSRCTLGDPNKLPEGVPQPARMPYISDKHPRQTLEVINLLRKHRELCDVVLVVG
AKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAA
CLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLI
DIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRD
LVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRR
CGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVS
CLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGT
RRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGT
TYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIKMTHCESHIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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