NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25892.1 Public Mus musculus 12 Lsmem1 23 108 98 CCDS HistoryNCBI Gene:380755Re-query CCDS DB by CCDS ID:25892.1Re-query CCDS DB by GeneID:380755See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095760.2 ENSMUSP00000093434.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095760.2Link to Ensembl Protein Viewer:ENSMUSP00000093434.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095760Re-query CCDS DB by Protein ID:ENSMUSP00000093434
Original member Current member NCBI NM_001033437.2 NP_001028609.1 Accepted alive Link to Nucleotide Sequence:NM_001033437.2Link to Protein Sequence:NP_001028609.1Re-query CCDS DB by Nucleotide ID:NM_001033437Re-query CCDS DB by Protein ID:NP_001028609Link to BLAST:NP_001028609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028609.1 128 Q3UQS2-1 128 100% 0 0

Chromosomal Locations for CCDS 25892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 40177098 40177228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40180646 40180774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40185289 40185415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGACTCATTCCTCTCAGGATGCTGGGTCTCATGGCATCCAGGAAGAAGGAAGACTCTACGTTGTGGATT
CCATAAATGACTTAAACAAACTCAGTCTCTGCCCGATGGAATCACAACATCTATTCTCTTTAGAGGACAA
AATCCCCAATGCTGGCACAGCCCCAGGAAATGGAAGGCGGGGGCTGTTTTTTGTGGGGCTGCTCCTGGTG
TTGACGGTCAGCCTGGCTCTGGTCTTCTTCGCCATCTTTCTAATAATTCAAACAGGAAACCAGATGGAGG
ACGTGTCAAGAAGGCTGACAGCTGAGGGAAAGGACATAGATGATCTTAAGAAAATCAACAACATGATTGT
AAAGCGGCTCAACCAGCTGGACTCTGAACAGAACTGA

Translation (128 aa):
MTHSSQDAGSHGIQEEGRLYVVDSINDLNKLSLCPMESQHLFSLEDKIPNAGTAPGNGRRGLFFVGLLLV
LTVSLALVFFAIFLIIQTGNQMEDVSRRLTAEGKDIDDLKKINNMIVKRLNQLDSEQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH