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Report for CCDS33616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33616.1 Public Homo sapiens 22 SLC2A11 24 110 108 CCDS HistoryNCBI Gene:66035Re-query CCDS DB by CCDS ID:33616.1Re-query CCDS DB by GeneID:66035See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316185.9 ENSP00000326748.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316185.9Link to Ensembl Protein Viewer:ENSP00000326748.8Re-query CCDS DB by Nucleotide ID:ENST00000316185Re-query CCDS DB by Protein ID:ENSP00000326748
Original member Current member NCBI NM_001024939.4 NP_001020110.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001024939.4Link to Protein Sequence:NP_001020110.1Re-query CCDS DB by Nucleotide ID:NM_001024939Re-query CCDS DB by Protein ID:NP_001020110Link to BLAST:NP_001020110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020110.1 499 Q9BYW1-3 499 100% 0 0

Chromosomal Locations for CCDS 33616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23858000 23858029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23862104 23862202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23868481 23868641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23875117 23875241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877042 23877171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877721 23877869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882459 23882646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882759 23882869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883772 23883873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883949 23884024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884302 23884429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884649 23884849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGCTCCACGCCCTCCTGCGATCTAGAATGATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCCG
GCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGA
ATTCACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGG
TCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCA
CGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAATCCTGTTTGGATT
CAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGGTGTG
AGCATGAACATCCAGCCCATGTACCTGGGGGAGAGCGCCCCTAAGGAGCTCCGAGGAGCTGTGGCCATGA
GCTCAGCCATCTTTACGGCTCTGGGGATCGTGATGGGACAGGTGGTCGGACTCAGGGAGCTCCTAGGTGG
CCCTCAGGCCTGGCCCCTGCTGCTGGCCAGCTGCCTGGTGCCCGGGGCGCTCCAGCTCGCCTCCCTGCCT
CTGCTCCCTGAAAGCCCGCGCTACCTCCTCATTGACTGTGGAGACACCGAGGCCTGCCTGGCAGCACTAC
GGCGGCTCCGGGGCTCCGGGGACTTGGCAGGGGAGCTGGAGGAGCTGGAGGAGGAGCGCGCTGCCTGCCA
GGGCTGCCGTGCCCGGCGCCCATGGGAGCTGTTCCAGCATCGGGCCCTGAGGAGACAGGTGACAAGCCTC
GTGGTTCTGGGCAGTGCCATGGAGCTCTGCGGGAATGACTCGGTGTACGCCTACGCCTCCTCCGTGTTCC
GGAAGGCAGGAGTGCCGGAAGCGAAGATCCAGTACGCGATCATCGGGACTGGGAGCTGCGAGCTGCTCAC
GGCGGTTGTTAGTTGTGTGGTAATCGAGAGGGTGGGTCGGCGCGTGCTGCTCATCGGTGGGTACAGCCTG
ATGACCTGCTGGGGGAGCATCTTCACTGTGGCCCTGTGCCTGCAGAGCTCCTTCCCCTGGACACTCTACC
TGGCCATGGCCTGCATCTTTGCCTTCATCCTCAGCTTTGGCATTGGCCCTGCCGGAGTGACGGGGATCCT
GGCCACAGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGGTCTGCGGGGCGCTCATGTGGATC
ATGCTCATCCTGGTCGGCCTGGGATTTCCCTTTATCATGGAGGCCTTGTCCCACTTCCTCTATGTCCCTT
TCCTTGGTGTCTGTGTCTGTGGGGCCATCTACACTGGCCTGTTCCTTCCTGAGACCAAAGGCAAGACCTT
CCAAGAGATCTCCAAGGAATTACACAGACTCAACTTCCCCAGGCGGGCCCAGGGCCCCACGTGGAGGAGC
CTGGAGGTTATCCAGTCAACAGAACTCTAG

Translation (499 aa):
MLHALLRSRMIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMW
SLIVSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNAGV
SMNIQPMYLGESAPKELRGAVAMSSAIFTALGIVMGQVVGLRELLGGPQAWPLLLASCLVPGALQLASLP
LLPESPRYLLIDCGDTEACLAALRRLRGSGDLAGELEELEEERAACQGCRARRPWELFQHRALRRQVTSL
VVLGSAMELCGNDSVYAYASSVFRKAGVPEAKIQYAIIGTGSCELLTAVVSCVVIERVGRRVLLIGGYSL
MTCWGSIFTVALCLQSSFPWTLYLAMACIFAFILSFGIGPAGVTGILATELFDQMARPAACMVCGALMWI
MLILVGLGFPFIMEALSHFLYVPFLGVCVCGAIYTGLFLPETKGKTFQEISKELHRLNFPRRAQGPTWRS
LEVIQSTEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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