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Report for CCDS46302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46302.1 Public Homo sapiens 2 VPS54 24 110 108 CCDS HistoryNCBI Gene:51542Re-query CCDS DB by CCDS ID:46302.1Re-query CCDS DB by GeneID:51542See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409558.8 ENSP00000386980.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409558.8Link to Ensembl Protein Viewer:ENSP00000386980.3Re-query CCDS DB by Nucleotide ID:ENST00000409558Re-query CCDS DB by Protein ID:ENSP00000386980
Original member Current member NCBI NM_001005739.2 NP_001005739.1 Accepted alive Link to Nucleotide Sequence:NM_001005739.2Link to Protein Sequence:NP_001005739.1Re-query CCDS DB by Nucleotide ID:NM_001005739Re-query CCDS DB by Protein ID:NP_001005739Link to BLAST:NP_001005739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005739.1 965 Q9P1Q0-4 965 100% 0 0

Chromosomal Locations for CCDS 46302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 63893430 63893535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63897496 63897590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63899474 63899581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63912345 63912425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63912540 63912661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63913223 63913310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63914182 63914287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63916900 63916963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63919883 63919995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63920446 63920627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63921206 63921335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63933673 63934013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63942465 63942561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63944600 63944655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63947383 63947490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63949037 63949163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63962058 63962443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63965835 63965966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63968957 63968991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63972166 63972244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63981646 63981851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63983864 63983999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2898 nt):
ATGGCTTCAAGCCACAGTTCTTCACCAGTGCCTCAAGGAAGCAGCAGTGATGTTTTCTTTAAAATAGAGG
TAGATCCGTCAAAACACATTCGACCTGTGCCATCACTGCCAGATGTGTGTCCCAAGGAACCCACAGTTAC
AGATCAACATAGATGGACTGTATATCATTCCAAAGTAAATCTCCCAGCAGCATTAAACGATCCTAGATTA
GCAAAAAGAGAATCTGACTTCTTCACAAAAACATGGGGATTGGACTTTGTGGACACTGAAGTCATACCTT
CATTCTACCTCCCACAGATCAGCAAGGAACATTTTACAGTATATCAACAGGAAATCTCTCAGAGAGAGAA
GATTCATGAGAGATGCAAGAATATTTGTCCTCCTAAAGATACCTTCGAAAGGACTCTTTTACATACTCAT
GATAAATCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTTATGAAACCAGATTTTGCCTTGGATGATT
CCTTAACTTTTAATTCAGTTTTACCATGGTCTCATTTTAATACTGCTGGTGGAAAAGGAAATCGTGATGC
AGCTTCCTCAAAGTTGCTTCAAGAAAAGCTGAGCCATTATCTGGATATTGTGGAAGTAAACATTGCTCAC
CAGATCTCTCTACGTTCAGAAGCATTTTTTCATGCAATGACCTCTCAACACGAGTTGCAGGACTACCTCA
GGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGATAAAATTGCACAGATTGATAAAGTAATGTGTGAAGG
ATCACTCCACATTTTAAGACTGGCACTTACCAGAAATAATTGTGTTAAAGTATACAATAAGCTGAAGTTA
ATGGCCACTGTACACCAGACTCAGCCTACAGTACAGGTGTTATTATCTACTTCTGAATTTGTTGGAGCAT
TGGACTTAATAGCAACAACACAAGAGGTTCTACAGCAGGAACTTCAGGGCATTCACAGTTTCCGGCATTT
GGGATCACAGCTTTGTGAATTAGAAAAACTGATAGATAAAATGATGATTGCAGAATTTTCTACTTATTCT
CACAGTGACTTAAATAGACCACTGGAAGATGACTGTCAAGTTTTAGAAGAGGAAAGACTAATATCTCTTG
TATTTGGACTTTTAAAACAAAGAAAGCTTAATTTTTTAGAAATCTATGGTGAAAAAATGGTTATTACAGC
AAAGAATATCATTAAACAGTGTGTGATTAATAAAGTTTCACAAACAGAAGAAATAGACACAGATGTTGTT
GTGAAGCTTGCAGATCAGATGAGAATGTTGAATTTTCCCCAGTGGTTTGATCTGCTCAAGGATATTTTCT
CTAAGTTTACAATTTTCCTACAGAGAGTGAAGGCAACATTAAATATCATTCACAGTGTTGTTCTCTCAGT
TCTTGACAAAAACCAAAGGACTAGAGAATTGGAAGAGATTTCACAACAGAAGAATGCTGCAAAAGATAAT
TCACTGGACACAGAGGTGGCTTATTTAATCCATGAAGGCATGTTTATAAGTGATGCATTCGGTGAGGGTG
AGCTAACACCTATAGCAGTTGACACTACCTCTCAAAGAAATGCATCTCCAAATAGTGAGCCCTGCAGCAG
TGATTCTGTATCCGAGCCAGAATGTACTACTGATTCTTCATCCAGCAAAGAGCACACATCATCATCTGCT
ATTCCAGGAGGTGTGGATATTATGGTCAGTGAAGATATGAAATTAACTGACTCAGAGCTAGGAAAGCTGG
CAAATAATATCCAGGAATTATTATATAGTGCCTCAGATATATGCCATGATCGAGCTGTCAAATTTCTCAT
GTCAAGAGCAAAGGATGGTTTTCTTGAGAAGCTAAATTCCATGGAATTCATAACACTTTCTAGATTAATG
GAAACATTCATTTTAGACACCGAACAGATCTGTGGAAGAAAAAGCACGTCATTACTTGGAGCACTTCAGA
GCCAAGCTATTAAGTTTGTAAATAGGTTTCATGAAGAGAGAAAAACCAAGCTCAGCCTCCTCTTAGACAA
TGAGCGCTGGAAGCAAGCAGATGTTCCTGCAGAATTTCAGGATCTTGTTGATTCTCTGTCAGATGGGAAG
ATTGCTTTACCTGAAAAAAAATCAGGAGCCACAGAAGAAAGGAAACCAGCTGAAGTTCTTATTGTCGAGG
GACAACAGTATGCAGTTGTTGGAACCGTATTGCTGTTAATAAGAATTATCCTTGAATATTGCCAGTGTGT
GGATAACATCCCATCTGTTACTACTGACATGCTTACTCGTCTGTCAGATTTATTGAAGTACTTCAATTCA
AGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGCACTGCAAGTTGTTGGACTAAAAACGATAACTACAAAAA
ATTTGGCTCTTTCTTCACGATGTTTGCAGTTAATTGTGCACTACATTCCTGTGATCCGGGCTCATTTTGA
AGCTCGACTACCACCTAAGCAATATAGCATGCTTAGGCATTTTGATCATATCACTAAGGACTACCATGAT
CACATAGCTGAAATATCAGCTAAGCTTGTAGCGATAATGGATAGCTTATTTGACAAGCTGTTATCTAAGT
ATGAAGTGAAGGCTCCTGTTCCTTCTGCCTGTTTCAGGAATATTTGTAAGCAAATGACAAAAATGCACGA
AGCTATATTTGATCTCCTTCCAGAAGAACAAACACAGATGTTATTTTTAAGAATTAATGCAAGTTATAAA
CTCCACTTGAAAAAGCAGTTATCTCACTTAAATGTGATAAATGATGGAGGACCTCAAAATGGGTTGGTCA
CAGCAGATGTAGCTTTTTACACTGGAAATCTTCAAGCCTTAAAAGGCCTTAAAGATTTGGACCTAAATAT
GGCCGAAATTTGGGAGCAGAAGAGGTGA

Translation (965 aa):
MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPTVTDQHRWTVYHSKVNLPAALNDPRL
AKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHERCKNICPPKDTFERTLLHTH
DKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEVNIAH
QISLRSEAFFHAMTSQHELQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKL
MATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYS
HSDLNRPLEDDCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINKVSQTEEIDTDVV
VKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEISQQKNAAKDN
SLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSSSA
IPGGVDIMVSEDMKLTDSELGKLANNIQELLYSASDICHDRAVKFLMSRAKDGFLEKLNSMEFITLSRLM
ETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSLSDGK
IALPEKKSGATEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNS
RSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHD
HIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYK
LHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIWEQKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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