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Report for CCDS8496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8496.1 Public Homo sapiens 11 THYN1 24 110 108 CCDS HistoryNCBI Gene:29087Re-query CCDS DB by CCDS ID:8496.1Re-query CCDS DB by GeneID:29087See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341541.8 ENSP00000341657.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341541.8Link to Ensembl Protein Viewer:ENSP00000341657.3Re-query CCDS DB by Nucleotide ID:ENST00000341541Re-query CCDS DB by Protein ID:ENSP00000341657
Original member Current member EBI ENST00000392594.7 ENSP00000376373.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392594.7Link to Ensembl Protein Viewer:ENSP00000376373.3Re-query CCDS DB by Nucleotide ID:ENST00000392594Re-query CCDS DB by Protein ID:ENSP00000376373
Original member Current member EBI ENST00000392595.6 ENSP00000376374.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392595.6Link to Ensembl Protein Viewer:ENSP00000376374.2Re-query CCDS DB by Nucleotide ID:ENST00000392595Re-query CCDS DB by Protein ID:ENSP00000376374
Original member Current member NCBI NM_001037305.2 NP_001032382.1 Accepted alive Link to Nucleotide Sequence:NM_001037305.2Link to Protein Sequence:NP_001032382.1Re-query CCDS DB by Nucleotide ID:NM_001037305Re-query CCDS DB by Protein ID:NP_001032382Link to BLAST:NP_001032382.1
Original member Current member NCBI NM_014174.3 NP_054893.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014174.3Link to Protein Sequence:NP_054893.1Re-query CCDS DB by Nucleotide ID:NM_014174Re-query CCDS DB by Protein ID:NP_054893Link to BLAST:NP_054893.1
Original member Current member NCBI NM_199298.2 NP_954995.1 Accepted alive Link to Nucleotide Sequence:NM_199298.2Link to Protein Sequence:NP_954995.1Re-query CCDS DB by Nucleotide ID:NM_199298Re-query CCDS DB by Protein ID:NP_954995Link to BLAST:NP_954995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032382.1 225 Q9P016-1 225 100% 0 0
NP_054893.1 225 Q9P016-1 225 100% 0 0
NP_954995.1 225 Q9P016-1 225 100% 0 0

Chromosomal Locations for CCDS 8496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 134248438 134248484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134248809 134248959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134249167 134249262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134249828 134249920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134250275 134250343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134251130 134251308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134252840 134252882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGTCGAGACCCCGGAAGAGGCTGGCTGGGACTTCTGGTTCAGACAAGGGACTATCAGGAAAACGCACCA
AAACTGAGAACTCAGGTGAGGCATTAGCTAAAGTGGAGGACTCCAACCCTCAGAAGACTTCAGCCACTAA
AAACTGTTTGAAGAATCTAAGCAGCCACTGGCTGATGAAGTCAGAGCCAGAGAGCCGCCTAGAGAAAGGT
GTAGATGTGAAGTTCAGCATTGAGGATCTCAAAGCACAGCCCAAACAGACAACATGCTGGGATGGTGTTC
GTAACTACCAGGCTCGGAACTTCCTTAGAGCCATGAAGCTGGGAGAAGAAGCCTTCTTCTACCATAGCAA
CTGCAAAGAGCCAGGCATCGCAGGACTCATGAAGATCGTGAAAGAGGCTTACCCAGACCACACACAGTTT
GAGAAAAACAATCCCCATTATGACCCATCTAGCAAAGAGGACAACCCTAAGTGGTCCATGGTGGATGTAC
AGTTTGTTCGGATGATGAAACGTTTCATTCCCCTGGCTGAGCTCAAATCCTATCATCAAGCTCACAAAGC
TACTGGTGGCCCCTTAAAAAATATGGTTCTCTTCACTCGCCAGAGATTATCAATCCAGCCCCTGACCCAG
GAAGAGTTTGATTTTGTTTTGAGCCTGGAGGAAAAGGAACCAAGTTAA

Translation (225 aa):
MSRPRKRLAGTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTSATKNCLKNLSSHWLMKSEPESRLEKG
VDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAYPDHTQF
EKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQ
EEFDFVLSLEEKEPS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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