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Report for CCDS46895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46895.1 Public Homo sapiens 3 HACD2 24 110 108 CCDS HistoryNCBI Gene:201562Re-query CCDS DB by CCDS ID:46895.1Re-query CCDS DB by GeneID:201562See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46895.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383657.10 ENSP00000373153.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383657.10Link to Ensembl Protein Viewer:ENSP00000373153.5Re-query CCDS DB by Nucleotide ID:ENST00000383657Re-query CCDS DB by Protein ID:ENSP00000373153
Original member Current member NCBI NM_198402.5 NP_940684.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198402.5Link to Protein Sequence:NP_940684.1Re-query CCDS DB by Nucleotide ID:NM_198402Re-query CCDS DB by Protein ID:NP_940684Link to BLAST:NP_940684.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940684.1 254 Q6Y1H2 254 100% 0 0

Chromosomal Locations for CCDS 46895.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123494888 123494970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123500515 123500693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123502560 123502681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123528386 123528474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123567762 123567780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123582212 123582329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123584873 123585027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGCGGCAGTGGCGGCGACTGCAGCAGCGAAGGGGAATGGGGGCGGCGGTGGCAGGGCCGGGGCCGGGG
ACGCCAGCGGCACGCGGAAGAAGAAGGGCCCGGGGCCCCTGGCCACGGCGTACCTGGTCATCTACAATGT
GGTGATGACAGCCGGGTGGCTGGTTATAGCGGTTGGTCTGGTCCGAGCATACCTGGCTAAGGGTAGCTAC
CATAGCCTTTATTATTCAATTGAAAAGCCTTTGAAATTCTTTCAAACTGGAGCCTTATTGGAGATTTTAC
ATTGTGCTATAGGAATTGTTCCATCTTCTGTTGTCCTGACTTCTTTCCAGGTGATGTCAAGAGTTTTTCT
AATATGGGCAGTAACACATAGCGTCAAAGAGGTACAGAGTGAAGACAGTGTCCTCCTGTTTGTTATTGCA
TGGACGATCACGGAAATCATCCGTTACTCCTTTTATACATTCAGTCTATTAAACCATCTGCCTTACCTCA
TCAAATGGGCCAGGTACACACTTTTCATTGTGCTGTACCCAATGGGAGTGTCAGGAGAACTGCTCACAAT
ATATGCAGCTCTGCCCTTTGTCAGACAAGCTGGCCTATATTCCATCAGTTTACCCAACAAATACAATTTC
TCTTTTGACTACTATGCATTCCTGATTCTAATAATGATCTCCTACATTCCAATTTTTCCCCAGTTATACT
TCCACATGATACACCAGAGAAGAAAGATCCTTTCTCATACTGAAGAACACAAGAAATTTGAATAG

Translation (254 aa):
MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY
HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIA
WTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNF
SFDYYAFLILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKKFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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