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Report for CCDS4812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4812.1 Public Homo sapiens 6 LHFPL5 24 110 108 CCDS HistoryNCBI Gene:222662Re-query CCDS DB by CCDS ID:4812.1Re-query CCDS DB by GeneID:222662See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4812.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360215.3 ENSP00000353346.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360215.3Link to Ensembl Protein Viewer:ENSP00000353346.1Re-query CCDS DB by Nucleotide ID:ENST00000360215Re-query CCDS DB by Protein ID:ENSP00000353346
Original member Current member EBI ENST00000651132.1 ENSP00000498322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651132.1Link to Ensembl Protein Viewer:ENSP00000498322.1Re-query CCDS DB by Nucleotide ID:ENST00000651132Re-query CCDS DB by Protein ID:ENSP00000498322
Original member Current member EBI ENST00000651676.1 ENSP00000498699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651676.1Link to Ensembl Protein Viewer:ENSP00000498699.1Re-query CCDS DB by Nucleotide ID:ENST00000651676Re-query CCDS DB by Protein ID:ENSP00000498699
Original member Current member NCBI NM_182548.4 NP_872354.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182548.4Link to Protein Sequence:NP_872354.1Re-query CCDS DB by Nucleotide ID:NM_182548Re-query CCDS DB by Protein ID:NP_872354Link to BLAST:NP_872354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872354.1 219 Q8TAF8 219 100% 0 0

Chromosomal Locations for CCDS 4812.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35805671 35806082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35814546 35814782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35819437 35819447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGTGAAATTGCTGCCGGCCCAGGAGGCAGCCAAGATCTACCATACCAACTATGTGCGGAACTCGCGAG
CCGTGGGCGTGATGTGGGGTACCCTCACCATCTGCTTCTCCGTACTGGTCATGGCCCTCTTCATCCAGCC
CTACTGGATCGGCGACAGCGTCAACACACCGCAGGCAGGCTACTTCGGCCTTTTCTCCTACTGCGTGGGT
AACGTGCTGTCCTCCGAGCTCATCTGCAAGGGCGGCCCCCTAGACTTCTCCTCCATCCCCTCTAGAGCCT
TCAAGACTGCCATGTTCTTTGTGGCCTTGGGCATGTTCCTCATCATTGGCTCCATCATCTGCTTCAGCCT
GTTCTTCATCTGCAACACGGCCACAGTCTATAAGATCTGTGCATGGATGCAGCTGGCTGCGGCCACAGGC
CTAATGATTGGCTGCCTGGTCTACCCTGATGGTTGGGACTCAAGTGAGGTGCGGCGCATGTGTGGGGAGC
AGACGGGCAAGTACACGCTGGGCCACTGCACCATCCGCTGGGCCTTCATGCTGGCCATCCTCAGCATTGG
CGACGCCCTCATCCTCTCCTTCCTGGCCTTCGTGTTGGGCTACCGGCAGGACAAGCTCCTCCCTGACGAC
TACAAGGCAGATGGAACCGAGGAGGTGTGA

Translation (219 aa):
MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFGLFSYCVG
NVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTATVYKICAWMQLAAATG
LMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALILSFLAFVLGYRQDKLLPDD
YKADGTEEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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