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Report for CCDS3975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3975.1 Public Homo sapiens 5 GAPT 24 110 108 CCDS HistoryNCBI Gene:202309Re-query CCDS DB by CCDS ID:3975.1Re-query CCDS DB by GeneID:202309See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318469.2 ENSP00000323075.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318469.2Link to Ensembl Protein Viewer:ENSP00000323075.2Re-query CCDS DB by Nucleotide ID:ENST00000318469Re-query CCDS DB by Protein ID:ENSP00000323075
Original member Current member EBI ENST00000396776.6 ENSP00000379997.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396776.6Link to Ensembl Protein Viewer:ENSP00000379997.2Re-query CCDS DB by Nucleotide ID:ENST00000396776Re-query CCDS DB by Protein ID:ENSP00000379997
Original member Current member EBI ENST00000511930.2 ENSP00000422645.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511930.2Link to Ensembl Protein Viewer:ENSP00000422645.2Re-query CCDS DB by Nucleotide ID:ENST00000511930Re-query CCDS DB by Protein ID:ENSP00000422645
Original member Current member EBI ENST00000502276.6 ENSP00000423113.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502276.6Link to Ensembl Protein Viewer:ENSP00000423113.2Re-query CCDS DB by Nucleotide ID:ENST00000502276Re-query CCDS DB by Protein ID:ENSP00000423113
Original member Current member EBI ENST00000515443.2 ENSP00000507091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515443.2Link to Ensembl Protein Viewer:ENSP00000507091.1Re-query CCDS DB by Nucleotide ID:ENST00000515443Re-query CCDS DB by Protein ID:ENSP00000507091
Original member Current member EBI ENST00000513924.2 ENSP00000508387.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513924.2Link to Ensembl Protein Viewer:ENSP00000508387.1Re-query CCDS DB by Nucleotide ID:ENST00000513924Re-query CCDS DB by Protein ID:ENSP00000508387
Original member Current member NCBI NM_001304428.2 NP_001291357.1 Accepted alive Link to Nucleotide Sequence:NM_001304428.2Link to Protein Sequence:NP_001291357.1Re-query CCDS DB by Nucleotide ID:NM_001304428Re-query CCDS DB by Protein ID:NP_001291357Link to BLAST:NP_001291357.1
Original member Current member NCBI NM_001304429.2 NP_001291358.1 Accepted alive Link to Nucleotide Sequence:NM_001304429.2Link to Protein Sequence:NP_001291358.1Re-query CCDS DB by Nucleotide ID:NM_001304429Re-query CCDS DB by Protein ID:NP_001291358Link to BLAST:NP_001291358.1
Original member Current member NCBI NM_001304431.2 NP_001291360.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304431.2Link to Protein Sequence:NP_001291360.1Re-query CCDS DB by Nucleotide ID:NM_001304431Re-query CCDS DB by Protein ID:NP_001291360Link to BLAST:NP_001291360.1
Original member Current member NCBI NM_152687.4 NP_689900.1 Accepted alive Link to Nucleotide Sequence:NM_152687.4Link to Protein Sequence:NP_689900.1Re-query CCDS DB by Nucleotide ID:NM_152687Re-query CCDS DB by Protein ID:NP_689900Link to BLAST:NP_689900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291357.1 157 Q8N292 157 100% 0 0
NP_001291358.1 157 Q8N292 157 100% 0 0
NP_001291360.1 157 Q8N292 157 100% 0 0
NP_689900.1 157 Q8N292 157 100% 0 0

Chromosomal Locations for CCDS 3975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 58494537 58495010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGTCGAAAAGCTGTGGAAATAATTTAGCGGCCATTTCTGTAGGAATTTCGCTTCTTTTACTCTTAGTGG
TTTGTGGAATTGGGTGTGTTTGGCACTGGAAACACCGTGTTGCCACACGATTTACCTTACCGAGGTTTTT
ACAAAGGAGAAGCAGCAGGAGAAAAGTCTGTACTAAAACATTCTTGGGCCCCCGCATCATTGGCTTAAGG
CATGAAATCTCAGTTGAAACCCAAGACCACAAATCTGCTGTCAGGGGAAATAACACACACGACAACTATG
AAAATGTGGAAGCAGGTCCTCCCAAAGCTAAAGGAAAAACCGATAAGGAACTATATGAAAACACAGGGCA
GTCTAATTTCGAGGAGCATATCTATGGAAATGAGACATCTTCTGACTATTATAACTTCCAGAAGCCTCGT
CCTTCTGAAGTTCCTCAAGATGAAGATATATACATTCTTCCAGATTCATATTAG

Translation (157 aa):
MSKSCGNNLAAISVGISLLLLLVVCGIGCVWHWKHRVATRFTLPRFLQRRSSRRKVCTKTFLGPRIIGLR
HEISVETQDHKSAVRGNNTHDNYENVEAGPPKAKGKTDKELYENTGQSNFEEHIYGNETSSDYYNFQKPR
PSEVPQDEDIYILPDSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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