NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6552.1 Public Homo sapiens 9 NUDT2 24 110 108 CCDS HistoryNCBI Gene:318Re-query CCDS DB by CCDS ID:6552.1Re-query CCDS DB by GeneID:318See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346365.8 ENSP00000344187.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346365.8Link to Ensembl Protein Viewer:ENSP00000344187.4Re-query CCDS DB by Nucleotide ID:ENST00000346365Re-query CCDS DB by Protein ID:ENSP00000344187
Original member Current member EBI ENST00000379155.9 ENSP00000368452.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379155.9Link to Ensembl Protein Viewer:ENSP00000368452.5Re-query CCDS DB by Nucleotide ID:ENST00000379155Re-query CCDS DB by Protein ID:ENSP00000368452
Original member Current member EBI ENST00000379158.7 ENSP00000368455.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379158.7Link to Ensembl Protein Viewer:ENSP00000368455.1Re-query CCDS DB by Nucleotide ID:ENST00000379158Re-query CCDS DB by Protein ID:ENSP00000368455
Original member Current member EBI ENST00000618590.1 ENSP00000482384.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618590.1Link to Ensembl Protein Viewer:ENSP00000482384.1Re-query CCDS DB by Nucleotide ID:ENST00000618590Re-query CCDS DB by Protein ID:ENSP00000482384
Original member Current member NCBI NM_001161.5 NP_001152.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001161.5Link to Protein Sequence:NP_001152.1Re-query CCDS DB by Nucleotide ID:NM_001161Re-query CCDS DB by Protein ID:NP_001152Link to BLAST:NP_001152.1
Original member Current member NCBI NM_001244390.2 NP_001231319.1 Accepted alive Link to Nucleotide Sequence:NM_001244390.2Link to Protein Sequence:NP_001231319.1Re-query CCDS DB by Nucleotide ID:NM_001244390Re-query CCDS DB by Protein ID:NP_001231319Link to BLAST:NP_001231319.1
Original member Current member NCBI NM_147172.3 NP_671701.1 Accepted alive Link to Nucleotide Sequence:NM_147172.3Link to Protein Sequence:NP_671701.1Re-query CCDS DB by Nucleotide ID:NM_147172Re-query CCDS DB by Protein ID:NP_671701Link to BLAST:NP_671701.1
Original member Current member NCBI NM_147173.3 NP_671702.1 Accepted alive Link to Nucleotide Sequence:NM_147173.3Link to Protein Sequence:NP_671702.1Re-query CCDS DB by Nucleotide ID:NM_147173Re-query CCDS DB by Protein ID:NP_671702Link to BLAST:NP_671702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152.1 147 P50583 147 100% 0 0
NP_001231319.1 147 P50583 147 100% 0 0
NP_671701.1 147 P50583 147 100% 0 0
NP_671702.1 147 P50583 147 100% 0 0

Chromosomal Locations for CCDS 6552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34339040 34339166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34343124 34343440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCCTTGAGAGCATGTGGCTTGATCATCTTCCGAAGATGCCTCATTCCCAAAGTGGACAACAATGCAA
TTGAGTTTTTACTGCTGCAGGCATCAGATGGCATTCATCACTGGACTCCTCCCAAAGGCCATGTGGAACC
AGGAGAGGATGACTTGGAAACAGCCCTGAGGGAGACCCAAGAGGAAGCAGGCATAGAAGCAGGCCAGCTG
ACCATTATTGAGGGGTTCAAAAGGGAACTCAATTATGTGGCCAGGAACAAGCCTAAAACAGTCATTTACT
GGCTGGCGGAGGTGAAGGACTATGACGTGGAGATCCGCCTCTCCCATGAGCACCAAGCCTACCGCTGGCT
GGGGCTGGAGGAGGCCTGCCAGTTGGCTCAGTTCAAGGAGATGAAGGCAGCGCTCCAAGAAGGACACCAG
TTTCTTTGCTCCATAGAGGCCTGA

Translation (147 aa):
MALRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQL
TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQ
FLCSIEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH