NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19772.1 Public Mus musculus 5 Lrch4 23 108 98 CCDS HistoryNCBI Gene:231798Re-query CCDS DB by CCDS ID:19772.1Re-query CCDS DB by GeneID:231798See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031734.15 ENSMUSP00000031734.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031734.15Link to Ensembl Protein Viewer:ENSMUSP00000031734.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031734Re-query CCDS DB by Protein ID:ENSMUSP00000031734
Original member Current member EBI ENSMUST00000177545.1 ENSMUSP00000135286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177545.1Link to Ensembl Protein Viewer:ENSMUSP00000135286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177545Re-query CCDS DB by Protein ID:ENSMUSP00000135286
Original member Current member NCBI NM_146164.2 NP_666276.1 Accepted alive Link to Nucleotide Sequence:NM_146164.2Link to Protein Sequence:NP_666276.1Re-query CCDS DB by Nucleotide ID:NM_146164Re-query CCDS DB by Protein ID:NP_666276Link to BLAST:NP_666276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666276.1 680 Q921G6-1 680 100% 0 0

Chromosomal Locations for CCDS 19772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137629207 137629426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137633572 137633716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137633849 137633975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137634144 137634249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137636739 137636875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137636985 137637097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137637213 137637312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137637545 137637635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137637726 137637802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137637905 137637966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137638066 137638182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137638293 137638361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137638439 137638542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137638655 137638738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137639122 137639198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137639350 137639487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137639578 137639655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137639948 137640145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGGCGGCAGCAGTAGCGGGCCCACTCGCCGCCGGGGGTGAGGAAGCTGCAGCTTCAGTGTCCTTGCCAG
GGTCTCCTGGTCTACCTGGGAGCCGTAGCGCAGAACGAGCCCTAGAGGAGGCTGTGGCCACCGGGACCCT
GAACTTGTCCAACCGGCGTTTGAAGCACTTCCCCCGGGGCGCGGCCCGCAGTTACGACTTGTCAGACATC
ACCCAGGCTGACTTGTCTCGGAACCGGTTTCCCGAGGTGCCTGAGGCAGCTTGCCAGCTGGTGTCCCTGG
AAGGCCTGAGCCTCTACCACAATTGCCTGAAATGCCTGAACCCAGCCTTGGGGAATCTTACAGCCCTCAC
CTACCTCAACCTCAGCCGGAACCAGCTGTCGTCGTTGCCACCCTACATCTGCCAGCTGCCCCTTCGAGTG
CTTATCATCAGCAACAACAAGTTAGGAGCCCTGCCTCCAGACATCAGCACCTTGGGAAGCCTGCGGCAGC
TTGATGTGAGCAGCAATGAGCTGCAGTCCCTGCCCGTGGAGCTGTGTAGCCTCCGTTCCCTGCGGGATCT
CAATGTTCGAAGGAACCAGCTCAGTACCCTGCCTGATGAGCTGGGAGACCTTCCTCTGGTCCGCCTGGAT
TTCTCCTGTAACCGCATCTCCCGAATCCCCGTCTCCTTCTGCCGCCTCAGGCACCTGCAGGTCGTTCTGC
TGGATAGCAACCCCCTACAGAGTCCACCTGCCCAGATATGCCTGAAGGGGAAACTTCACATCTTCAAGTA
CCTAACAATGGAAGCTGGCCGGAGGGGAGCCGCCCTCGGGGACCTGGTCCCTTCCCGCCCCCCAAGTTTT
AGTCCTTGCCCTGCCGAAGATTTATTTCCGGGACGTCGTTATGATGGTGGCCTGGACTCAGGCTTCCACA
GCGTTGACAGTGGCAGCAAGAGGTGGTCAGGAAATGAGTCCACAGATGATTTTTCAGAGCTGTCTTTCCG
GATCTCGGAGCTGGCTCGTGATCCCCGGGGGCCTAGACAACCTAGGGAAGATGGCGCTGGCGATGGAGAC
CTGGAGCAGATTGACTTTATTGACAGCCACGTTCCTGGGGAAGATGAAGATCGAAGTGCAGCTGAGGAGC
AGCTGCCTTCTGAATTAAGCCTTGTAGCAGGGGATGTGGAGAAGCCATCTAGCAGCAGGCGAGAGGAGCC
TGCAGGGGAGGAGAGGCGGCGCCCAGACACTTTGCAGTTGTGGCAGGAACGGGAGCGGAAGCAACAGCAA
CAGAGTGGGGGATGGGGGTCCCCCAGGAAGGACAGCGTCCTGAAGCGGGGGATCCGAGCTGCCGGGGCAG
GTGCTTCGGCCCCATCCACACAGGCCACCTGCAATGGCCCACCAAAGTCCAGCACTACCCAACTGGGAGT
TTCAGGGGGGCAGGGAGCTCCCACACCACCCCCCACCTCCCAGGACCCCCTTCCTGTATCTGGACCAGTG
ACAGCTCCTGTTCCCAGGCCCCTGGGCTCCATTCAGAGACCAAACAGCTTCCTCTTCCGGTCCTCTTCTC
AGAGTGGCTCTAGTCCTTCCTCTCCAGAGTCTGTTTTGAGACCTCGGCCGTTTCCTCAGGAGAAGGAGCT
AATATCCCAACTTCGCCAGGTCCTAGAGTCGCGGCTGCAGCAGCCCCTACCTGAGGACCTGGCAGAAGCT
CTCGCCAACGGAGTCCTCCTTTGCCAGCTGGCGAACCAGCTGCGGCCCCGCTCTGTACCCTTCATTCATG
TGCCCTCACCTGCTGTGCCAAAGCTCAGTGCTCTCAAGTCTCGGAAGAATGTCGAGAGTTTCCTAGAAGC
CTGTCGGAAAATGGGTGTGCCTGAGGCTGACCTGTGCTCGCCCTCGGATCTCCTCCGGGGCACCGCCCAG
GGGCTGCAGACCGTCCTGGAGGCTGTGATCCTGGTTGGGGGCAAGGCCCCTCTCCCAGTCCAGCCCTCCT
CTGGTCTGGGTGGCTTCCTCCTCTTCTACGTGGTCTTCATGCTGCTGCTCTATGTCGTCTACACTCGGCT
CCTGGGCTCCTAG

Translation (680 aa):
MAAAVAGPLAAGGEEAAASVSLPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDI
TQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLKCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRV
LIISNNKLGALPPDISTLGSLRQLDVSSNELQSLPVELCSLRSLRDLNVRRNQLSTLPDELGDLPLVRLD
FSCNRISRIPVSFCRLRHLQVVLLDSNPLQSPPAQICLKGKLHIFKYLTMEAGRRGAALGDLVPSRPPSF
SPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDDFSELSFRISELARDPRGPRQPREDGAGDGD
LEQIDFIDSHVPGEDEDRSAAEEQLPSELSLVAGDVEKPSSSRREEPAGEERRRPDTLQLWQERERKQQQ
QSGGWGSPRKDSVLKRGIRAAGAGASAPSTQATCNGPPKSSTTQLGVSGGQGAPTPPPTSQDPLPVSGPV
TAPVPRPLGSIQRPNSFLFRSSSQSGSSPSSPESVLRPRPFPQEKELISQLRQVLESRLQQPLPEDLAEA
LANGVLLCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLCSPSDLLRGTAQ
GLQTVLEAVILVGGKAPLPVQPSSGLGGFLLFYVVFMLLLYVVYTRLLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH