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Report for CCDS33507.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33507.2 Public Homo sapiens 20 BHLHE23 24 110 108 CCDS HistoryNCBI Gene:128408Re-query CCDS DB by CCDS ID:33507.2Re-query CCDS DB by GeneID:128408See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 33507.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in primates.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33507.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612929.2 ENSP00000480998.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612929.2Link to Ensembl Protein Viewer:ENSP00000480998.1Re-query CCDS DB by Nucleotide ID:ENST00000612929Re-query CCDS DB by Protein ID:ENSP00000480998
Original member Current member NCBI NM_080606.4 NP_542173.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080606.4Link to Protein Sequence:NP_542173.2Re-query CCDS DB by Nucleotide ID:NM_080606Re-query CCDS DB by Protein ID:NP_542173Link to BLAST:NP_542173.2

Chromosomal Locations for CCDS 33507.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63006049 63006774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAGCATCCGCCCACCCGGCGAGCCCCCGAGCCCAGGCGGCGCGGCCATGGCCGAGCTCAAGTCGCTGT
CGGGGGACGCGTACCTGGCACTAAGCCACGGCTACGCGGCGGCGGCTGCGGGTCTCGCCTACGGGGCGGC
GCGAGAACCCGAAGCGGCCCGCGGCTACGGCACTCCGGGCCCGGGCGGCGACCTCCCCGCGGCGCCTGCA
CCTCGCGCCCCAGCTCAGGCGGCGGAGAGCAGCGGCGAACAGAGCGGGGACGAGGACGACGCCTTCGAGC
AGCGGCGGCGGCGGCGCGGGCCAGGGAGCGCGGCGGACGGGCGGCGGCGGCCGCGAGAGCAGCGGTCTCT
GCGGCTCAGCATCAACGCGCGCGAGCGGCGGCGCATGCACGACCTAAACGACGCGCTGGACGGGCTGCGA
GCCGTCATCCCCTACGCGCACAGCCCGTCGGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTCGCCA
AGAACTATATCCTCATGCAGGCGCAGGCCCTGGACGAGATGCGGCGCCTGGTGGCCTTCCTCAACCAGGG
CCAGGGCCTGGCCGCGCCCGTAAACGCCGCGCCCTTGACGCCCTTCGGCCAGGCCACTGTGTGCCCCTTC
TCCGCAGGCGCCGCCCTGGGGCCCTGCCCTGACAAGTGCGCCGCCTTCTCCGGGACGCCCTCCGCGCTTT
GCAAACACTGTCACGAGAAGCCGTGA

Translation (241 aa):
MSIRPPGEPPSPGGAAMAELKSLSGDAYLALSHGYAAAAAGLAYGAAREPEAARGYGTPGPGGDLPAAPA
PRAPAQAAESSGEQSGDEDDAFEQRRRRRGPGSAADGRRRPREQRSLRLSINARERRRMHDLNDALDGLR
AVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALDEMRRLVAFLNQGQGLAAPVNAAPLTPFGQATVCPF
SAGAALGPCPDKCAAFSGTPSALCKHCHEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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