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Report for CCDS39432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39432.1 Public Mus musculus 6 Cttnbp2 23 108 98 CCDS HistoryNCBI Gene:30785Re-query CCDS DB by CCDS ID:39432.1Re-query CCDS DB by GeneID:30785See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39432.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090601.11 ENSMUSP00000088089.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090601.11Link to Ensembl Protein Viewer:ENSMUSP00000088089.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090601Re-query CCDS DB by Protein ID:ENSMUSP00000088089
Original member Current member NCBI NM_080285.2 NP_525024.1 Accepted alive Link to Nucleotide Sequence:NM_080285.2Link to Protein Sequence:NP_525024.1Re-query CCDS DB by Nucleotide ID:NM_080285Re-query CCDS DB by Protein ID:NP_525024Link to BLAST:NP_525024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_525024.1 1648 B9EJA2-1 1648 100% 0 0

Chromosomal Locations for CCDS 39432.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 18367371 18367616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18374524 18374622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18375937 18376069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18378367 18378430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18380463 18380639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18380968 18381173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18382746 18382924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18388028 18388215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18389083 18389235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18397333 18397432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18397518 18397604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18405184 18405263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18406456 18406551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18408482 18408757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18414182 18414299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18420766 18421017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18423831 18423981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18426036 18426135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18427439 18427642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18433820 18435446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18448248 18448469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18501949 18502056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18514655 18514735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4947 nt):
ATGGCGACGGACAGCGCGAGCTGCGAGCCCGACTTGTCCCGCACCCCGGGTGACACGGAGGGGGCCACGG
CGGAGGCGGCGAAAAAGGAATTTGATGTGGACACGCTCAGCAAATCAGAGCTGCGGATGCTCCTTAGCGT
GATGGAAGGTGAACTAGAAGCCAGAGACCTGGTGATTGAGGCCCTGAGGGCTCGCAGGAAGGAGGTGTTC
ATCCAGGAACGGTATGGGAGGTTTAATCTAAATGACCCCTTCCTGGCACTTCAGAGAGACTATGAAGCAG
GTCCTGGTGACAAAGAGAAGCCAGTCTGCACCAATCCACTCTCCATCCTTGAAGCTGTCATGGCCCACTG
CAGAAAAATGCAAGAAAGGATGTCCGCACAGCTGGTGGCCGCTGAGAGCAGACAAAAAAAGTTGGAGATG
GAAAAGCTCCAGCTCCAGGCCCTTGAACAGGAGCACAAGAAGCTGGCTGCCCACCTGGAGGAAGAGCGGG
GCAAGAACAAGCACGTGGTCCTGATGCTGGTGAAGGAGTGTAAGCAGCTCTCGGGCAAAGTCGTGGAGGA
GGCCCAGAAGCTGGAGGAAGTCATGGCGCAACTGGAGGAGGAAAAGAAAAAGACAAGTGAGTTAGAAGAG
CAGCTCTCAGCTGAGAAACAGAGAAGCTCTGGAATGGAAGCTCAGTTGGAGAAACAGCTCTCCGAGTTTG
ACACGGAACGGGAGCAGCTGCGCGCCAAGCTGAGCCGAGAGGAAGCACACACCACCGACCTCAAAGAGGA
GATAGACAAGATGAAGAAAATGATGGAGCAAATGAAGAAGGGAAGTGATGGCAAGCCCGGCCTCTCCCTC
CCACGGAAGACAAAAGATAAGCGCCTGGCTTCCATATCTGTGGCAACAGAAGGGCCTGTGACAAGGTCCG
TTGCTTGCCAGACAGATGTAGTGACAGAAAGCACTGACCCTGTGAAGAAGTTGCCTTTGACTGTACCCAT
AAAGCCTTCCACAGGGAGCCCCCTAGTTCCCACAAACACAAAAGGGAATGTGGGCCCCAGTGCCCTGCTG
ATTAGACCAGGTATTGATAGGCAGTCTTCCCACAGTGACTTGGGTCCCTCTCCACCTACTGCTCTACCTT
CAAGTGCAAACAGAATTGAGGAGAATGGACCAAGCACAGGCAATGCCCCTGATCTATCAAATAGCACCCC
CTCAACTCCTAGTAGCACTGCCCCTGCCGCTGCTCAGACACCAGGCACAGCACCCCAGAACCACTCACAA
GCTCCTACTGTGCACAGTTTACATTCACCATGTGCCAACACTCATCCAGGCCTCAACCCACGCATCCAAG
CAGCTAGATTCAGATTTCAGGGCAATGCAAATGACCCAGACCAGAATGGAAATAACACTCAAAGCCCTCC
CTCGAGAGATGTCTCTCCTACGAGTCGTGACAACCTAGTAGCCAAGCAGCTAGCTCGGAATACTGTGACC
CAAGCGCTGTCCAGATTTACCAGCCCTCAAGCGGGTGCTTCTTCAAGACTTGGAGTATCTCCAGGAGGGG
ACGCTGGCACCTGCCCTCCAGTTGGTCGAACCGGTTTAAAGACTCCCGGGGCAGCAAGAGTTGACAGAGG
AAATCCTCCTCCTATCCCTCCCAAAAAGCCAGGGCTCTCCCAAACTCCTTCTCCGCCACACCCCCAACTG
AGGGCCTCCAATGCAGGGGCCAAAGTTGATAACAAAATTGTGGCTTCACCTCCCTCTACTTTGCCACAAG
GGACCAAGGTAGTAAATGAGGAGAACGTCCCTAAGTCGTCCTCCCCTCAGCTGCCACCAAAACCGTCCAT
AGATTTAACTGTGGCACCTGCAGGCTGTCCCGTTTCGGCCCTGGCCACGTCTCAGGTGGGTGCCTGGCCT
GCTGGAACCCCTGGACTGAACCAACCCGCATGTTCAGACAGCTCCCTTGTCATTCCCGCCACCGTTGCCT
TTTGCTCTTCCATAAACCCTGTTAGTGCCTCATCCCGTAGCCCCGGTGCCTCAGACAGCCTCTTGGTAGC
AGCATCAGGCTGGTCACCCTCCCTAACCCCTTTGCTAATGAGTGGTGGTCCTGCCCCCCTGGCTGGCAGG
CCCACCCTTCTTCAGCAAGCTGCTGCCCAGGGAAATGTCACTTTATTATCAATGCTGCTTAATGAAGAAG
GACTGGACATAAATTACTCCTGCGAAGATGGCCATTCTGCCTTGTATTCTGCTGCTAAGAATGGACATAC
AGACTGTGTGCGATTGCTGCTGAATGCAGAAGCCCGAGTCGACGCTGCTGATAAAAATGGCTTCACACCC
TTGTGCGTCGCAGCTGCTCAGGGACATTTTGAATGTATAGAATTACTAACTGCATACAATGCCAACATTA
ATCACTCTGCTGCTGGAGGACAGACACCTTTGTACTTGGCCTGTAAAAATGGAAATAAGGAATGTATCAA
ACTCCTGCTGGAAGCTGGCACTGACCGGAGCATAAAAACCAGAGATGGCTGGACGCCAATTCACGCAGCT
GTGGACACTGGTAATGTGGACAGCCTCAAGCTCCTGATGTACCATAGAGTGCGAGCCCATGGAAACTCTT
TGAGTTCAGAAGAGCCCAAGTCAGGCTTGTTCAGCTTGAATGGAGGAGAGAGCCCTACGGGTCCATCTAA
GCCTGTGGTTCCTGCAGACCTAATTAACCACGCTGACAAAGAAGGCTGGACTGCTGCCCACATTGCTGCC
TCCAAAGGTTTCAAGAACTGCCTAGAAGTCTTGTGTAGGCATGGAGGACTAGAGCCGGAAAGGAGAGACA
AGTGCAATCGGACTGTGCACGATGTTGCCACTGATGACTGCAAGCATTTGCTGGAGAATCTGAATGCTCT
TAAAATACCCTTAAGGATTTCCGTGGGTGAGATTCAACCAAGCAACGATGTTTCTGACGACTTTGAATGT
GAACATACGATATGCACTTTAAATATCCGCAAACAGACATCATGGGAAGATTTTTCCAAAGCAGTGAGTC
AGGCTCTGACAAATCATTTCCAAGCCATCTCTTCTGATGGATGGTGGAGTCTGGAAGATGGGACATTTAA
TAATGCTACTGACTCCTGCATCGGTCTTGGCACCAGCAGTATACGATCCATCATGTTAGGAAGTATGCCG
TGGTCAACTGGTCAGAGCTTCTCCCAGTCCCCGTGGGACTTCTTGAAAAAGAAGAAGGTGGAGCAGGTCC
TGGCGCTCTTGTCAGGTCCCCAAGAAGGCTGCCTCAGTAGTGTGACTTACGCATCCATGATCCCACTTCA
GATGCTGCAGAACTACCTCAGGCTGGTTGAGCAATATCATAATGTCATTTTCCATGGACCAGAAGGAAGC
TTGCAAGACTACATAGCAAATCAGCTTGCCCTCTGCATGAAGTACAGACAGATGGCTGCAGGATTCCCCT
GTGAAATAGTGAGAGCCGAGGTGGATTCGGGTTTCTCCAAAGAGCAGCTAGTAGACGTGTTCATCAGGAA
TGCTTGTCTCATCCCAGTGAAGCAGTTCCCTGTTAAGAAGAAAATAATCGTCATCTTGGAAAATTTGGAA
AAATCTTCATTGTCTGAGTTACTGGGGGACTTTCTGGCACCTTTGGAAAATCGCAGCACTGAAAGCCCCT
GCACTTTCCAAAAAGGAAATGGAACATCCGAATGCTATTATTTCCATGAGAACTGCTTTCTGGTGGGAAC
CATTGCCAAAGCCTGTCTCCAGGGCTCTGACCTGCTGGTACAGCAACACTTCCGCTGGGTTCAGCTGCGC
TGGGATTGCGAGCCCATTCAAGGATTGCTTCAGAGGTTCTTACGAAGGAAAGTCGTCAGCAAGTTCAGAG
GTCAGCTGCCTGCACCCTGTGATCCTGTATGTAAGATTGTGGACTGGGCTCTGTCTGTCTGGAGGCAGCT
CAACTCCTGTCTGGCCCGCTTGGGTACACCAGAAGCACTTCTTGGACCAAAGTATTTCCTGTCGTGTCCA
GTAGTCCCGGGACATGCCCAGGCAACAGTGAAGTGGATGTCTAAGCTGTGGAATGCTGTCATTGCTCCCA
GAGTTCAAGAAGCAATATTGTCAAGAGCCTCCATGAACAAACAACCTGGTACTGGGCAGACAGCTTCTAA
GAAGTACCCTAGCCAAGGACAGCAGGCTGTGGTGAGGGCCGCCCTCAGCATTCTGCTTAATAAAGCGGTT
CTGCATGGCTGTCCCCTTCCCAGGGCAGAGCTGGATCAGCAGATCGCAGACTTCAAAGGGGGCAGTTTTC
CTCTGTCAATAGTGTCAAGTTATAGCAAAAAGAAAGTGGAGAGCGGCGCCTGGAGAAAGGTGAACACCAG
TCCTCGAAAGAAGCCTGGGCACTTCTCCTCACCCACGTGGAACAAGCCAGACCCGAAGCGTGAAGGTATG
AGGAACAAGACTATACCACACCTGAATACTAACAGGAACTCCTCTCTGTCGAAGCAACAGTCCTTAGAGA
ATGATCTATCTGTGACATTGACTTTGGACCACAGACTCTCTTTGGGTTCAGATGATGAAGCAGATCTGGT
CAAAGAACTCCAGAGTATGTGTTCCAGCAAATCTGAGTCTGATATAAGTAAGATTGCTGATTCCAGGGAT
GACTTGAGGAAGTTTGATAGTTCAAGAACCAACCCTGGGACTTCAGCACCTCTTAACCTGAGGACACCAG
TGCCACAGAAGGAAGCCAGTCCTCCCAGCAGCCGTCAAACTGCCGAATGCAGCAACAGTAAATCAAAGAC
TGAGATGGGTGTCTCAAGCGTTAAATCTTTTCTTCCTGTTCCTAGAAGCAAAGTCGCTCAGTGTTCCCAG
AACACCAAAAGAAACAGCAGCAGCAGCAATACAAGGCAACTAGAAATCAACAACAACTCCAAAGAAGAGA
ATTGGACCTTAGACAAACACGAACAAGTAGAAAAACCAAACAAATAG

Translation (1648 aa):
MATDSASCEPDLSRTPGDTEGATAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEALRARRKEVF
IQERYGRFNLNDPFLALQRDYEAGPGDKEKPVCTNPLSILEAVMAHCRKMQERMSAQLVAAESRQKKLEM
EKLQLQALEQEHKKLAAHLEEERGKNKHVVLMLVKECKQLSGKVVEEAQKLEEVMAQLEEEKKKTSELEE
QLSAEKQRSSGMEAQLEKQLSEFDTEREQLRAKLSREEAHTTDLKEEIDKMKKMMEQMKKGSDGKPGLSL
PRKTKDKRLASISVATEGPVTRSVACQTDVVTESTDPVKKLPLTVPIKPSTGSPLVPTNTKGNVGPSALL
IRPGIDRQSSHSDLGPSPPTALPSSANRIEENGPSTGNAPDLSNSTPSTPSSTAPAAAQTPGTAPQNHSQ
APTVHSLHSPCANTHPGLNPRIQAARFRFQGNANDPDQNGNNTQSPPSRDVSPTSRDNLVAKQLARNTVT
QALSRFTSPQAGASSRLGVSPGGDAGTCPPVGRTGLKTPGAARVDRGNPPPIPPKKPGLSQTPSPPHPQL
RASNAGAKVDNKIVASPPSTLPQGTKVVNEENVPKSSSPQLPPKPSIDLTVAPAGCPVSALATSQVGAWP
AGTPGLNQPACSDSSLVIPATVAFCSSINPVSASSRSPGASDSLLVAASGWSPSLTPLLMSGGPAPLAGR
PTLLQQAAAQGNVTLLSMLLNEEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAEARVDAADKNGFTP
LCVAAAQGHFECIELLTAYNANINHSAAGGQTPLYLACKNGNKECIKLLLEAGTDRSIKTRDGWTPIHAA
VDTGNVDSLKLLMYHRVRAHGNSLSSEEPKSGLFSLNGGESPTGPSKPVVPADLINHADKEGWTAAHIAA
SKGFKNCLEVLCRHGGLEPERRDKCNRTVHDVATDDCKHLLENLNALKIPLRISVGEIQPSNDVSDDFEC
EHTICTLNIRKQTSWEDFSKAVSQALTNHFQAISSDGWWSLEDGTFNNATDSCIGLGTSSIRSIMLGSMP
WSTGQSFSQSPWDFLKKKKVEQVLALLSGPQEGCLSSVTYASMIPLQMLQNYLRLVEQYHNVIFHGPEGS
LQDYIANQLALCMKYRQMAAGFPCEIVRAEVDSGFSKEQLVDVFIRNACLIPVKQFPVKKKIIVILENLE
KSSLSELLGDFLAPLENRSTESPCTFQKGNGTSECYYFHENCFLVGTIAKACLQGSDLLVQQHFRWVQLR
WDCEPIQGLLQRFLRRKVVSKFRGQLPAPCDPVCKIVDWALSVWRQLNSCLARLGTPEALLGPKYFLSCP
VVPGHAQATVKWMSKLWNAVIAPRVQEAILSRASMNKQPGTGQTASKKYPSQGQQAVVRAALSILLNKAV
LHGCPLPRAELDQQIADFKGGSFPLSIVSSYSKKKVESGAWRKVNTSPRKKPGHFSSPTWNKPDPKREGM
RNKTIPHLNTNRNSSLSKQQSLENDLSVTLTLDHRLSLGSDDEADLVKELQSMCSSKSESDISKIADSRD
DLRKFDSSRTNPGTSAPLNLRTPVPQKEASPPSSRQTAECSNSKSKTEMGVSSVKSFLPVPRSKVAQCSQ
NTKRNSSSSNTRQLEINNNSKEENWTLDKHEQVEKPNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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