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Report for CCDS10743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10743.1 Public Homo sapiens 16 NKD1 24 110 108 CCDS HistoryNCBI Gene:85407Re-query CCDS DB by CCDS ID:10743.1Re-query CCDS DB by GeneID:85407See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268459.6 ENSP00000268459.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268459.6Link to Ensembl Protein Viewer:ENSP00000268459.3Re-query CCDS DB by Nucleotide ID:ENST00000268459Re-query CCDS DB by Protein ID:ENSP00000268459
Original member Current member NCBI NM_033119.5 NP_149110.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033119.5Link to Protein Sequence:NP_149110.1Re-query CCDS DB by Nucleotide ID:NM_033119Re-query CCDS DB by Protein ID:NP_149110Link to BLAST:NP_149110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149110.1 470 Q969G9 470 100% 0 0

Chromosomal Locations for CCDS 10743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 50548554 50548578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50548717 50548749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50549422 50549555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50608294 50608360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50621602 50621708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50625485 50625580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50630186 50630333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50630826 50630910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50632281 50632408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50633192 50633781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGGGAAACTTCACTCCAAGCCGGCCGCCGTGTGCAAGCGCAGGGAGAGCCCGGAAGGTGACAGCTTCG
CCGTGAGCGCTGCCTGGGCTCGGAAGGGCATCGAGGAGTGGATCGGGAGACAGCGCTGCCCGGGCGGTGT
CTCGGGACCCCGACAGCTGCGGTTGGCGGGCACCATAGGCCGAAGCACCCGGGAGCTCGTGGGCGACGTG
TTGAGAGACACGCTCAGCGAGGAAGAGGAGGACGACTTTCGGCTGGAAGTGGCCCTGCCTCCTGAGAAGA
CTGACGGGCTGGGCAGCGGAGATGAGAAGAAGATGGAGAGAGTGAGCGAACCCTGCCCAGGCTCCAAGAA
GCAGCTGAAGTTTGAAGAGCTCCAGTGCGACGTGTCCATGGAGGAGGACAGCCGGCAGGAGTGGACCTTC
ACCCTGTATGACTTTGACAACAACGGCAAGGTCACCCGAGAGGACATCACCAGCTTGCTGCACACCATCT
ATGAGGTGGTGGACTCCTCTGTCAACCACTCCCCAACATCCAGCAAGATGCTGCGGGTAAAGCTCACCGT
GGCCCCCGATGGCAGCCAGAGCAAGAGGAGCGTCCTTGTCAATCAGGCTGACCTGCAGAGCGCAAGGCCC
CGAGCAGAGACCAAGCCCACTGAGGACCTGCGGAGCTGGGAGAAGAAGCAGCGAGCCCCGCTCAGGTTCC
AGGGTGACAGCCGCCTGGAGCAGTCTGGCTGCTACCACCATTGCGTAGATGAGAACATCGAGAGGAGAAA
CCACTACTTAGATCTCGCCGGGATAGAAAACTACACGTCCCAATTTGGGCCTGGCTCCCCTTCCGTGGCC
CAGAAGTCAGAACTGCCCCCCCGCACCTCCAATCCCACTCGATCTCGCTCCCATGAGCCGGAAGCCATCC
ACATCCCACACCGAAAGCCCCAAGGCGTGGACCCGGCCTCCTTCCACTTCCTTGACACCCCAATCGCCAA
GGTCTCAGAGCTCCAGCAACGGCTCCGGGGCACCCAGGACGGGAGCAAGCACTTTGTGAGGTCCCCCAAG
GCCCAGGGCAAGAGTGTGGGTGTGGGCCACGTGGCCAGAGGGGCAAGAAACAAGCCCCCTCTGGGACCCG
CCATCCCTGCGGTGTCCCCCTCCGCCCACCTGGCTGCCAGCCCGGCCCTCCTCCCCTCCCTAGCCCCCCT
CGGGCACAAGAAGCACAAGCACCGAGCCAAGGAGAGCCAGCAGGGCTGCCGGGGCCTGCAGGCACCACTG
GCCTCAGGTGGCCCTGTCCTGGGGCGGGAGCACCTGCGGGAGCTGCCCGCCTTGGTGGTGTATGAGAGCC
AGGCCGGGCAGCCGGTCCAGAGACATGAGCACCACCACCACCATGAACATCACCACCATTACCACCACTT
CTACCAGACATAG

Translation (470 aa):
MGKLHSKPAAVCKRRESPEGDSFAVSAAWARKGIEEWIGRQRCPGGVSGPRQLRLAGTIGRSTRELVGDV
LRDTLSEEEEDDFRLEVALPPEKTDGLGSGDEKKMERVSEPCPGSKKQLKFEELQCDVSMEEDSRQEWTF
TLYDFDNNGKVTREDITSLLHTIYEVVDSSVNHSPTSSKMLRVKLTVAPDGSQSKRSVLVNQADLQSARP
RAETKPTEDLRSWEKKQRAPLRFQGDSRLEQSGCYHHCVDENIERRNHYLDLAGIENYTSQFGPGSPSVA
QKSELPPRTSNPTRSRSHEPEAIHIPHRKPQGVDPASFHFLDTPIAKVSELQQRLRGTQDGSKHFVRSPK
AQGKSVGVGHVARGARNKPPLGPAIPAVSPSAHLAASPALLPSLAPLGHKKHKHRAKESQQGCRGLQAPL
ASGGPVLGREHLRELPALVVYESQAGQPVQRHEHHHHHEHHHHYHHFYQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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