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Report for CCDS11733.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11733.2 Public Homo sapiens 17 MRPL38 24 110 108 CCDS HistoryNCBI Gene:64978Re-query CCDS DB by CCDS ID:11733.2Re-query CCDS DB by GeneID:64978See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11733.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11733.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309352.4 ENSP00000308275.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309352.4Link to Ensembl Protein Viewer:ENSP00000308275.4Re-query CCDS DB by Nucleotide ID:ENST00000309352Re-query CCDS DB by Protein ID:ENSP00000308275
Original member Current member NCBI NM_032478.4 NP_115867.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032478.4Link to Protein Sequence:NP_115867.2Re-query CCDS DB by Nucleotide ID:NM_032478Re-query CCDS DB by Protein ID:NP_115867Link to BLAST:NP_115867.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115867.2 380 Q96DV4-1 380 100% 0 0

Chromosomal Locations for CCDS 11733.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75898850 75898986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75899158 75899294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75899516 75899674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75900982 75901027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75901201 75901273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75901712 75901920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75902020 75902154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75904540 75904719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75904809 75904875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCGGCGCCCTGGTGGCGAGCCGCGCTGTGCGAGTGTCGGAGATGGCGGGGCTTCAGCACCTCGGCCG
TCCTGGGCCGCCGGACACCCCCGCTGGGGCCGATGCCCAACAGTGACATCGACTTGAGCAACCTGGAGCG
GCTGGAGAAGTACCGGAGCTTCGACCGCTACCGGCGCCGAGCAGAGCAGGAGGCGCAGGCCCCGCACTGG
TGGCGGACCTACCGAGAGTATTTCGGGGAGAAGACAGATCCCAAAGAGAAGATTGATATTGGGCTGCCTC
CACCCAAAGTCTCCCGGACCCAACAGCTACTGGAACGGAAACAGGCCATCCAGGAGCTTCGGGCCAATGT
GGAAGAGGAGCGGGCTGCCCGCCTCCGCACAGCCAGTGTCCCGCTGGATGCCGTGCGGGCCGAGTGGGAG
AGGACCTGTGGCCCCTACCACAAGCAGCGTCTGGCTGAGTATTACGGCCTCTACCGAGACCTGTTCCACG
GTGCCACCTTTGTGCCCCGAGTCCCCCTGCACGTGGCCTACGCTGTGGGTGAGGATGACCTGATGCCTGT
GTACTGTGGCAATGAGGTGACTCCAACCGAGGCTGCCCAAGCGCCAGAGGTGACCTATGAGGCAGAAGAG
GGCTCCTTGTGGACGTTGCTACTCACTAGCTTGGATGGGCACCTGCTGGAGCCAGATGCTGAGTACCTCC
ACTGGCTGCTAACCAACATCCCGGGTAACCGGGTGGCTGAAGGACAGGTGACGTGTCCCTACCTCCCCCC
CTTCCCTGCCCGAGGCTCCGGCATCCACCGTCTTGCCTTCCTGCTCTTCAAGCAGGACCAGCCGATTGAC
TTCTCTGAGGACGCACGCCCCTCACCCTGCTATCAGCTGGCCCAGCGGACCTTCCGCACTTTTGATTTCT
ACAAGAAACACCAAGAAACCATGACTCCAGCCGGCTTGTCCTTCTTCCAGTGCCGCTGGGATGACTCCGT
CACCTACATCTTCCACCAGCTTCTGGACATGCGGGAGCCGGTGTTTGAGTTCGTGCGGCCGCCCCCTTAC
CACCCCAAGCAGAAGCGCTTCCCCCACCGGCAGCCCCTGCGCTACCTGGACCGGTACAGGGACAGTCATG
AGCCCACCTATGGCATCTACTAA

Translation (380 aa):
MAAPWWRAALCECRRWRGFSTSAVLGRRTPPLGPMPNSDIDLSNLERLEKYRSFDRYRRRAEQEAQAPHW
WRTYREYFGEKTDPKEKIDIGLPPPKVSRTQQLLERKQAIQELRANVEEERAARLRTASVPLDAVRAEWE
RTCGPYHKQRLAEYYGLYRDLFHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAPEVTYEAEE
GSLWTLLLTSLDGHLLEPDAEYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFLLFKQDQPID
FSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIFHQLLDMREPVFEFVRPPPY
HPKQKRFPHRQPLRYLDRYRDSHEPTYGIY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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