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Report for CCDS6668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6668.1 Public Homo sapiens 9 HNRNPK 24 110 108 CCDS HistoryNCBI Gene:3190Re-query CCDS DB by CCDS ID:6668.1Re-query CCDS DB by GeneID:3190See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6668.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376263.8 ENSP00000365439.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376263.8Link to Ensembl Protein Viewer:ENSP00000365439.3Re-query CCDS DB by Nucleotide ID:ENST00000376263Re-query CCDS DB by Protein ID:ENSP00000365439
Original member Current member EBI ENST00000376281.8 ENSP00000365458.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376281.8Link to Ensembl Protein Viewer:ENSP00000365458.4Re-query CCDS DB by Nucleotide ID:ENST00000376281Re-query CCDS DB by Protein ID:ENSP00000365458
Original member Current member EBI ENST00000704005.1 ENSP00000515618.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704005.1Link to Ensembl Protein Viewer:ENSP00000515618.1Re-query CCDS DB by Nucleotide ID:ENST00000704005Re-query CCDS DB by Protein ID:ENSP00000515618
Original member Current member EBI ENST00000704011.1 ENSP00000515624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704011.1Link to Ensembl Protein Viewer:ENSP00000515624.1Re-query CCDS DB by Nucleotide ID:ENST00000704011Re-query CCDS DB by Protein ID:ENSP00000515624
Original member Current member EBI ENST00000704057.1 ENSP00000515660.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704057.1Link to Ensembl Protein Viewer:ENSP00000515660.1Re-query CCDS DB by Nucleotide ID:ENST00000704057Re-query CCDS DB by Protein ID:ENSP00000515660
Original member Current member EBI ENST00000704059.1 ENSP00000515662.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704059.1Link to Ensembl Protein Viewer:ENSP00000515662.1Re-query CCDS DB by Nucleotide ID:ENST00000704059Re-query CCDS DB by Protein ID:ENSP00000515662
Original member Current member NCBI NM_002140.5 NP_002131.2 Accepted alive Link to Nucleotide Sequence:NM_002140.5Link to Protein Sequence:NP_002131.2Re-query CCDS DB by Nucleotide ID:NM_002140Re-query CCDS DB by Protein ID:NP_002131Link to BLAST:NP_002131.2
Original member Current member NCBI NM_031263.4 NP_112553.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031263.4Link to Protein Sequence:NP_112553.1Re-query CCDS DB by Nucleotide ID:NM_031263Re-query CCDS DB by Protein ID:NP_112553Link to BLAST:NP_112553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002131.2 464 P61978-2 464 100% 0 0
NP_112553.1 464 P61978-2 464 100% 0 0

Chromosomal Locations for CCDS 6668.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 83969407 83969440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83970162 83970331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83970737 83970819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83970897 83970912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83971273 83971356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83971672 83971726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83971882 83972189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83972844 83972972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83973286 83973399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83973902 83973973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83974517 83974589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83975462 83975505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83976995 83977051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83977689 83977786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83978195 83978252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGAAACTGAACAGCCAGAAGAAACCTTCCCTAACACTGAAACCAATGGTGAATTTGGTAAACGCCCTG
CAGAAGATATGGAAGAGGAACAAGCATTTAAAAGATCTAGAAACACTGATGAGATGGTTGAATTACGCAT
TCTGCTTCAGAGCAAGAATGCTGGGGCAGTGATTGGAAAAGGAGGCAAGAATATTAAGGCTCTCCGTACA
GACTACAATGCCAGTGTTTCAGTCCCAGACAGCAGTGGCCCCGAGCGCATATTGAGTATCAGTGCTGATA
TTGAAACAATTGGAGAAATTCTGAAGAAAATCATCCCTACCTTGGAAGAGGGCCTGCAGTTGCCATCACC
CACTGCAACCAGCCAGCTCCCGCTCGAATCTGATGCTGTGGAATGCTTAAATTACCAACACTATAAAGGA
AGTGACTTTGACTGCGAGTTGAGGCTGTTGATTCATCAGAGTCTAGCAGGAGGAATTATTGGGGTCAAAG
GTGCTAAAATCAAAGAACTTCGAGAGAACACTCAAACCACCATCAAGCTTTTCCAGGAATGCTGTCCTCA
TTCCACTGACAGAGTTGTTCTTATTGGAGGAAAACCCGATAGGGTTGTAGAGTGCATAAAGATCATCCTT
GATCTTATATCTGAGTCTCCCATCAAAGGACGTGCACAGCCTTATGATCCCAATTTTTACGATGAAACCT
ATGATTATGGTGGTTTTACAATGATGTTTGATGACCGTCGCGGACGCCCAGTGGGATTTCCCATGCGGGG
AAGAGGTGGTTTTGACAGAATGCCTCCTGGTCGGGGTGGGCGTCCCATGCCTCCATCTAGAAGAGATTAT
GATGATATGAGCCCTCGTCGAGGACCACCTCCCCCTCCTCCCGGACGAGGCGGCCGGGGTGGTAGCAGAG
CTCGGAATCTTCCTCTTCCTCCACCACCACCACCTAGAGGGGGAGACCTCATGGCCTATGACAGAAGAGG
GAGACCTGGAGACCGTTACGACGGCATGGTTGGTTTCAGTGCTGATGAAACTTGGGACTCTGCAATAGAT
ACATGGAGCCCATCAGAATGGCAGATGGCTTATGAACCACAGGGTGGCTCCGGATATGATTATTCCTATG
CAGGGGGTCGTGGCTCATATGGTGATCTTGGTGGACCTATTATTACTACACAAGTAACTATTCCCAAAGA
TTTGGCTGGATCTATTATTGGCAAAGGTGGTCAGCGGATTAAACAAATCCGTCATGAGTCGGGAGCTTCG
ATCAAAATTGATGAGCCTTTAGAAGGATCCGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGA
TACAGAATGCACAGTATTTGCTGCAGAACAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAA

Translation (464 aa):
METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT
DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG
SDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL
DLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDY
DDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAID
TWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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