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Report for CCDS7696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7696.1 Public Homo sapiens 11 PTDSS2 24 110 108 CCDS HistoryNCBI Gene:81490Re-query CCDS DB by CCDS ID:7696.1Re-query CCDS DB by GeneID:81490See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7696.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308020.6 ENSP00000308258.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308020.6Link to Ensembl Protein Viewer:ENSP00000308258.5Re-query CCDS DB by Nucleotide ID:ENST00000308020Re-query CCDS DB by Protein ID:ENSP00000308258
Original member Current member NCBI NM_030783.3 NP_110410.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030783.3Link to Protein Sequence:NP_110410.1Re-query CCDS DB by Nucleotide ID:NM_030783Re-query CCDS DB by Protein ID:NP_110410Link to BLAST:NP_110410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110410.1 487 Q9BVG9 487 100% 0 0

Chromosomal Locations for CCDS 7696.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 450456 450637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 460187 460288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 473895 473977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 479085 479152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 486939 487073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 487420 487470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 488199 488312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 488529 488647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 489400 489514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 489588 489733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 489883 490068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 490420 490582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGCGGAGGGGCGAGCGCAGGGACGCCGGAGGTCCGCGGCCCGAGTCCCCGGTGCCCGCGGGCAGGGCCT
CGCTGGAGGAGCCGCCTGACGGGCCGTCTGCCGGCCAAGCCACCGGGCCGGGCGAGGGCCGCCGCAGCAC
CGAGTCCGAGGTCTACGACGACGGCACCAACACCTTCTTCTGGCGAGCCCACACCTTAACCGTGCTCTTC
ATCCTCACCTGTACGCTTGGCTATGTGACGCTGCTGGAGGAAACACCTCAGGACACGGCCTACAACACCA
AGAGAGGTATTGTGGCCAGTATTTTGGTTTTCTTATGTTTTGGAGTCACACAAGCTAAAGACGGGCCATT
TTCCAGACCTCATCCAGCTTACTGGAGGTTTTGGCTCTGCGTGAGTGTGGTCTACGAGCTGTTTCTCATC
TTTATACTCTTCCAGACTGTCCAGGACGGCCGGCAGTTTCTAAAGTATGTTGACCCCAAGCTGGGAGTCC
CACTGCCAGAGAGAGACTACGGGGGAAACTGCCTCATCTACGACCCAGACAATGAGACTGACCCCTTTCA
CAACATCTGGGACAAGTTGGATGGCTTTGTTCCCGCGCACTTTCTTGGCTGGTACCTGAAGACCCTGATG
ATCCGAGACTGGTGGATGTGCATGATCATCAGCGTGATGTTCGAGTTCCTGGAGTACAGCCTGGAGCACC
AGCTGCCCAACTTCAGCGAGTGCTGGTGGGATCACTGGATCATGGACGTGCTCGTCTGCAACGGGCTGGG
CATCTACTGCGGCATGAAGACCCTTGAGTGGCTGTCCCTGAAGACGTACAAGTGGCAGGGCCTCTGGAAC
ATTCCGACCTACAAGGGCAAGATGAAGAGGATCGCCTTCCAGTTCACGCCGTACAGCTGGGTTCGCTTCG
AGTGGAAGCCGGCCTCCAGCCTGCGTCGCTGGCTGGCCGTGTGCGGCATCATCCTGGTGTTCCTGTTGGC
AGAACTGAACACGTTCTACCTGAAGTTTGTGCTGTGGATGCCCCCGGAGCACTACCTGGTCCTCCTGCGG
CTCGTCTTCTTCGTGAACGTGGGTGGCGTGGCCATGCGTGAGATCTACGACTTCATGGATGACCCGAAGC
CCCACAAGAAGCTGGGCCCGCAGGCCTGGCTGGTGGCGGCCATCACGGCCACGGAGCTGCTCATCGTGGT
GAAGTACGACCCCCACACGCTCACCCTGTCCCTGCCCTTCTACATCTCCCAGTGCTGGACCCTCGGCTCC
GTCCTGGCGCTCACCTGGACCGTCTGGCGCTTCTTCCTGCGGGACATCACATTGAGGTACAAGGAGACCC
GGTGGCAGAAGTGGCAGAACAAGGATGACCAGGGCAGCACCGTCGGCAACGGGGACCAGCACCCACTGGG
GCTGGACGAAGACCTGCTGGGGCCTGGGGTGGCCGAGGGCGAGGGAGCACCAACTCCAAACTGA

Translation (487 aa):
MRRGERRDAGGPRPESPVPAGRASLEEPPDGPSAGQATGPGEGRRSTESEVYDDGTNTFFWRAHTLTVLF
ILTCTLGYVTLLEETPQDTAYNTKRGIVASILVFLCFGVTQAKDGPFSRPHPAYWRFWLCVSVVYELFLI
FILFQTVQDGRQFLKYVDPKLGVPLPERDYGGNCLIYDPDNETDPFHNIWDKLDGFVPAHFLGWYLKTLM
IRDWWMCMIISVMFEFLEYSLEHQLPNFSECWWDHWIMDVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWN
IPTYKGKMKRIAFQFTPYSWVRFEWKPASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLR
LVFFVNVGGVAMREIYDFMDDPKPHKKLGPQAWLVAAITATELLIVVKYDPHTLTLSLPFYISQCWTLGS
VLALTWTVWRFFLRDITLRYKETRWQKWQNKDDQGSTVGNGDQHPLGLDEDLLGPGVAEGEGAPTPN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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