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Report for CCDS17582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17582.1 Public Mus musculus 3 Tchhl1 23 108 98 CCDS HistoryNCBI Gene:71325Re-query CCDS DB by CCDS ID:17582.1Re-query CCDS DB by GeneID:71325See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029516.2 ENSMUSP00000029516.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029516.2Link to Ensembl Protein Viewer:ENSMUSP00000029516.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029516Re-query CCDS DB by Protein ID:ENSMUSP00000029516
Original member Current member NCBI NM_027762.3 NP_082038.2 Accepted alive Link to Nucleotide Sequence:NM_027762.3Link to Protein Sequence:NP_082038.2Re-query CCDS DB by Nucleotide ID:NM_027762Re-query CCDS DB by Protein ID:NP_082038Link to BLAST:NP_082038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082038.2 638 Q9D3P1 638 100% 0 0

Chromosomal Locations for CCDS 17582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 93469498 93469638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 93470132 93471907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGCCAAGGCTCCTGAGAGGTGTCTTCTGTGTCGTTGAGATATTCCACAAGTACGCCATTGAGGATGGCG
GCAACCAGGCAACACTGACCCGCACAGAGCTGAGACAGCTCCTTGAGGGAGAAATTGGGGACTTCCTTCA
GCCACATGTCTTTCATGCTGTGGAGAGAAAGTTGAACCTTCTGAATTTTGACAGAGATGGTACCATCAGT
TTTGAGGAATTTGTTCTTGCAATCTTCAGCTTATTGAATCCCTCTTATTTTGACATATCATTACTAAATT
CAGAACCAAGACTGATGTCTAAATCAGAGAAGATAGATGCTGTGGATTTGGGGGCAATTGGTGGAAACAT
TCAGCAGGTAGTAGGGGTTGGGCCAACTCAAGAAAGGCTCATATTTCCATCAGAAATGGCATCATCAGGT
CAGCCCAGCAATGAAGAAGGTGAGGTAGGTGATGAGCCTATGGTGAGCCCATGTGAAGACATTAAGACCC
ACAGCCTGCCAAGAAATGTGTCTGAGCCAAATGACCCTGAGAACCAACAGCCAAAAGAAGATGCTCAGGA
AGTCGCACAAAATGTACCAGCAACTGAATATGATGGAGTCCAATTTAAGAGAAATACAGTAGTCGAAGTA
CCCAAACAGAGCACCAGTCCAACACAGGAGATCCCAAGAGAAAGAAGTAAACCATCCAGGAGGCTAAGTG
ACACCAAGATAAGTGACCATATGATTCAGAGGCCAACTGAAGATGAGGAACATACTTCTACAACACAAGA
TCCATTCCTGCAAAAAAGAGACAAAGCCACCGGGTCAGAGAACACTGATTTGTCAGTAGTAGCTGCTACC
AGGAAATCATCTCAAACACAGGAAATTTTTGAGCCTATGGATGATACTAAACTATCTGAGGCTCAAGAAA
CTGGAAAGGATGCTGGCAGAATACCACCTGAAACAAATTTAGAGGAGCCCAAAGCTGATGCTAAAGTAGC
TGAGAGCCACGGATTGCCAGCACAAGAAAGAGAACACAATACAAGGGACCAGTCTGTTCAAAGCCGGAGC
AGAAATGTTTCAGAAACATCTAGTAGAGGAGAACAGGAGGGGGAGTGGAAAGAACATGAAAGAATAACTC
TATCCCCAACAGCAGATGCTGAAACACAGGATGAGAAGTGTCAAGAATTTCCAGGATCATGGAGGGAAAA
CGATGCCAAAAAGGACTCTGCTGCAAAAGATCCAAGTTCTGAAGAAGGAAATCAGAATCTCCCTGAAATT
AAGGAAGATTCTGTCTCAGGAAAAGAAGCAAGACACAGTGAGGAAGACACAGTATATGCATTTGAAATCA
ACAAAAACAGCCCTGCAGCTGAAGAGACATTGGAAACAAGAGAAAGGTCCCAGGAGCTGGCACCACTTGA
GAAGCAATCTCAAAGAAAAAAGCACAGGGCCACCAGGATTCAGGACAAGCCGGTCAGGAAGGAGGACCAC
AATGAGGGAGAAGATTCTGAGTTATCACTTACACAGAGTGATGAGGGCTTTTGTGAAATTCCCAACAGCC
TGGCTCCAGAGGTAGGTAAGAGCAGCTCAGAGATAGCTGAACCACATGTACCAGAGGATTCACAGAGTCA
GATAGACCACCATGGAGATGCTAAGCAAGAAAGTCACACTAACAACCCAGATCCCCAGAAGCAGGGAGCA
CCAGGTGAGAGCAGCAGAGAGCAGGAGGCAGTAGTGCTGTCAATCCAAGAAGATGGGCAGCTCCCAGAGG
GACAGGAACAGTCTGCCAGAGATGGTCTGCATGATGGTCTGAGCTCAAGGACCAAAGGAGGCCCAGGGGC
AGCTGTGGAGCCCAGTGAGGGAGAGGAGGTACAGGAGGCCACAGCAGGGAGAGAAAACAGGAAAGCCCTA
GAGGCAGAGAGTTTGGAGGCCCAGTGA

Translation (638 aa):
MPRLLRGVFCVVEIFHKYAIEDGGNQATLTRTELRQLLEGEIGDFLQPHVFHAVERKLNLLNFDRDGTIS
FEEFVLAIFSLLNPSYFDISLLNSEPRLMSKSEKIDAVDLGAIGGNIQQVVGVGPTQERLIFPSEMASSG
QPSNEEGEVGDEPMVSPCEDIKTHSLPRNVSEPNDPENQQPKEDAQEVAQNVPATEYDGVQFKRNTVVEV
PKQSTSPTQEIPRERSKPSRRLSDTKISDHMIQRPTEDEEHTSTTQDPFLQKRDKATGSENTDLSVVAAT
RKSSQTQEIFEPMDDTKLSEAQETGKDAGRIPPETNLEEPKADAKVAESHGLPAQEREHNTRDQSVQSRS
RNVSETSSRGEQEGEWKEHERITLSPTADAETQDEKCQEFPGSWRENDAKKDSAAKDPSSEEGNQNLPEI
KEDSVSGKEARHSEEDTVYAFEINKNSPAAEETLETRERSQELAPLEKQSQRKKHRATRIQDKPVRKEDH
NEGEDSELSLTQSDEGFCEIPNSLAPEVGKSSSEIAEPHVPEDSQSQIDHHGDAKQESHTNNPDPQKQGA
PGESSREQEAVVLSIQEDGQLPEGQEQSARDGLHDGLSSRTKGGPGAAVEPSEGEEVQEATAGRENRKAL
EAESLEAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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