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Report for CCDS43376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43376.1 Public Homo sapiens 5 HMHB1 24 110 108 CCDS HistoryNCBI Gene:57824Re-query CCDS DB by CCDS ID:43376.1Re-query CCDS DB by GeneID:57824See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 43376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289448.4 ENSP00000289448.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289448.4Link to Ensembl Protein Viewer:ENSP00000289448.3Re-query CCDS DB by Nucleotide ID:ENST00000289448Re-query CCDS DB by Protein ID:ENSP00000289448
Original member Current member NCBI NM_021182.3 NP_067005.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021182.3Link to Protein Sequence:NP_067005.1Re-query CCDS DB by Nucleotide ID:NM_021182Re-query CCDS DB by Protein ID:NP_067005Link to BLAST:NP_067005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067005.1 41 O97980 41 100% 0 0

Chromosomal Locations for CCDS 43376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143812268 143812304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143820480 143820568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (126 nt):
CTGGAGGAGCAGCCAGAATGCAGAGAAGAAAAAAGAGGTTCTCTGCATGTTTGGAAGTCGGAATTGGTTG
AAGTTGAAGATGATGTGTATCTGAGGCACAGCTCTTCCCTGACTTATAGGCTTTGA

Translation (41 aa):
MEEQPECREEKRGSLHVWKSELVEVEDDVYLRHSSSLTYRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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