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Report for CCDS11333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11333.1 Public Homo sapiens 17 PLXDC1 24 110 108 CCDS HistoryNCBI Gene:57125Re-query CCDS DB by CCDS ID:11333.1Re-query CCDS DB by GeneID:57125See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315392.9 ENSP00000323927.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315392.9Link to Ensembl Protein Viewer:ENSP00000323927.4Re-query CCDS DB by Nucleotide ID:ENST00000315392Re-query CCDS DB by Protein ID:ENSP00000323927
Original member Current member NCBI NM_020405.5 NP_065138.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020405.5Link to Protein Sequence:NP_065138.2Re-query CCDS DB by Nucleotide ID:NM_020405Re-query CCDS DB by Protein ID:NP_065138Link to BLAST:NP_065138.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065138.2 500 Q8IUK5-1 500 100% 0 0

Chromosomal Locations for CCDS 11333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39067840 39067959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39069856 39070016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39072450 39072485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39077913 39078048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39079104 39079164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39083459 39083540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39087607 39087702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39105854 39105953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39107407 39107525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39108123 39108245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39108904 39108973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39109248 39109391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39139654 39139832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39151362 39151437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGCGAGGCGAGCTCTGGCTCCTGGTGCTGGTGCTCAGGGAGGCTGCCCGGGCGCTGAGCCCCCAGCCCG
GAGCAGGTCACGATGAGGGCCCAGGCTCTGGATGGGCTGCCAAAGGGACCGTGCGGGGCTGGAACCGGAG
AGCCCGAGAGAGCCCTGGGCATGTGTCAGAGCCGGACAGGACCCAGCTGAGCCAGGACCTGGGTGGGGGC
ACCCTGGCCATGGACACGCTGCCAGATAACAGGACCAGGGTGGTGGAGGACAACCACAGCTATTATGTGT
CCCGTCTCTATGGCCCCAGCGAGCCCCACAGCCGGGAACTGTGGGTAGATGTGGCCGAGGCCAACCGGAG
CCAAGTGAAGATCCACACAATACTCTCCAACACCCACCGGCAGGCTTCGAGAGTGGTCTTGTCCTTTGAT
TTCCCTTTCTACGGGCATCCTCTGCGGCAGATCACCATAGCAACTGGAGGCTTCATCTTCATGGGGGACG
TGATCCATCGGATGCTCACAGCTACTCAGTATGTGGCGCCCCTGATGGCCAACTTCAACCCTGGCTACTC
CGACAACTCCACAGTTGTTTACTTTGACAATGGGACAGTCTTTGTGGTTCAGTGGGACCACGTTTATCTC
CAAGGCTGGGAAGACAAGGGCAGTTTCACCTTCCAGGCAGCTCTGCACCATGACGGCCGCATTGTCTTTG
CCTATAAAGAGATCCCTATGTCTGTCCCGGAAATCAGCTCCTCCCAGCATCCTGTCAAAACCGGCCTATC
GGATGCCTTCATGATTCTCAATCCATCCCCGGATGTGCCAGAATCTCGGCGAAGGAGCATCTTTGAATAT
CACCGCATAGAGCTGGACCCCAGCAAGGTCACCAGCATGTCGGCCGTGGAGTTCACCCCATTGCCGACCT
GCCTGCAGCATAGGAGCTGTGACGCCTGCATGTCCTCAGACCTGACCTTCAACTGCAGCTGGTGCCATGT
CCTCCAGAGATGCTCCAGTGGCTTTGACCGCTATCGCCAGGAGTGGATGGACTATGGCTGTGCACAGGAG
GCAGAGGGCAGGATGTGCGAGGACTTCCAGGATGAGGACCACGACTCAGCCTCCCCTGACACTTCCTTCA
GCCCCTATGATGGAGACCTCACCACTACCTCCTCCTCCCTCTTCATCGACAGCCTCACCACAGAAGATGA
CACCAAGTTGAATCCCTATGCAGGAGGAGACGGCCTTCAGAACAACCTGTCCCCCAAGACAAAGGGCACT
CCTGTGCACCTGGGCACCATCGTGGGCATCGTGCTGGCAGTCCTCCTCGTGGCGGCCATCATCCTGGCTG
GAATTTACATCAATGGCCACCCCACATCCAATGCTGCGCTCTTCTTCATCGAGCGTAGACCTCACCACTG
GCCAGCCATGAAGTTTCGCAGCCACCCTGACCATTCCACCTATGCGGAGGTGGAGCCCTCGGGCCATGAG
AAGGAGGGCTTCATGGAGGCTGAGCAGTGCTGA

Translation (500 aa):
MRGELWLLVLVLREAARALSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDRTQLSQDLGGG
TLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVKIHTILSNTHRQASRVVLSFD
FPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQWDHVYL
QGWEDKGSFTFQAALHHDGRIVFAYKEIPMSVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEY
HRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWMDYGCAQE
AEGRMCEDFQDEDHDSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTKGT
PVHLGTIVGIVLAVLLVAAIILAGIYINGHPTSNAALFFIERRPHHWPAMKFRSHPDHSTYAEVEPSGHE
KEGFMEAEQC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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