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Report for CCDS41837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41837.1 Public Homo sapiens 12 CUX2 24 110 108 CCDS HistoryNCBI Gene:23316Re-query CCDS DB by CCDS ID:41837.1Re-query CCDS DB by GeneID:23316See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261726.11 ENSP00000261726.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261726.11Link to Ensembl Protein Viewer:ENSP00000261726.6Re-query CCDS DB by Nucleotide ID:ENST00000261726Re-query CCDS DB by Protein ID:ENSP00000261726
Original member Current member NCBI NM_015267.4 NP_056082.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015267.4Link to Protein Sequence:NP_056082.2Re-query CCDS DB by Nucleotide ID:NM_015267Re-query CCDS DB by Protein ID:NP_056082Link to BLAST:NP_056082.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056082.2 1486 O14529 1486 100% 0 0

Chromosomal Locations for CCDS 41837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111034178 111034240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111214200 111214310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111217890 111217937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111263761 111263839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111291418 111291552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111293446 111293569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111295333 111295409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111296473 111296539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111298541 111298589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111304210 111304314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111306921 111307112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111307199 111307257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111308285 111308333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111308427 111308526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111310041 111310682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111312100 111312201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111320012 111320775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111322421 111322580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111334441 111334710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111338286 111338474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111341780 111342053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111347524 111348325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4461 nt):
ATGGCCGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGATTTGATCTACGGCGACTCCAGAAGGAGC
TT
AATTCCGTCGCTTCTGAGCTGTCTGCACGGCAGGAGGAGAGTGAACATTCTCATAAACATTTAATTGA
A
CTCCGCCGGGAATTTAAGAAAAATGTACCTGAGGAAATCAGAGAGATGGTGGCTCCTGTATTAAAAAGC
TTC
CAAGCCGAGGTGGTGGCCCTTAGTAAGAGAAGTCAGGAGGCGGAGGCTGCTTTTCTGAGTGTTTACA
AG
CAATTAATTGAAGCACCAGACCCCGTGCCTGTGTTTGAGGCGGCACGCAGCCTAGACGACAGACTGCA
G
CCCCCCAGCTTTGACCCCAGTGGGCAGCCCCGGCGAGACCTCCACACTTCGTGGAAGAGGAACCCCGAG
CTC
CTCAGCCCCAAAGAGCAGAGAGAGGGGACGTCGCCTGCCGGGCCCACGCTGACCGAGGGAAGCCGCC
TC
CCAGGCATTCCCGGGAAAGCCCTCCTGACAGAAACCTTGCTGCAGAGAAATGAGGCGGAAAAACAAAA
G
GGCCTTCAAGAAGTACAGATCACTTTGGCGGCCAGACTGGGGGAGGCAGAGGAGAAAATCAAAGTCCTA
CAT
TCAGCGCTAAAGGCTACGCAGGCAGAGCTGCTAGAGCTGCGGCGGAAGTACGACGAGGAGGCAGCAT
CC
AAGGCAGATGAAGTCGGCCTGATCATGACCAACCTGGAGAAAGCTAATCAGCGAGCTGAGGCTGCCCA
G
CGGGAGGTGGAAAGTCTCCGGGAACAGCTGGCCTCTGTCAACAGCTCCATCCGCCTGGCTTGCTGCTCT
CCC
CAGGGGCCCAGTGGGGATAAGGTGAACTTCACTCTGTGCTCGGGCCCTCGGCTGGAGGCCGCGCTGG
CC
TCCAAGGACAGGGAGATCCTGCGGCTGCTGAAGGACGTGCAGCACCTCCAGAGCTCACTGCAGGAGCT
G
GAGGAGGCATCCGCCAACCAGATCGCCGACCTGGAGCGGCAGCTCACGGCCAAGTCCGAGGCCATAGAA
AAG
CTGGAAGAGAAGCTCCAGGCCCAGTCTGACTATGAGGAAATTAAAACGGAGCTGAGCATCCTGAAAG
CC
ATGAAGCTGGCCTCCAGCACCTGCAGCCTCCCCCAGGGCATGGCCAAGCCTGAAGACTCACTGCTTAT
T
GCAAAGGAGGCCTTCTTCCCCACGCAGAAATTCCTTCTGGAGAAGCCCAGCCTCCTGGCCAGCCCTGAG
GAA
GACCCATCAGAGGACGATTCCATCAAGGATTCACTGGGCACGGAGCAGTCCTACCCCTCCCCTCAGC
AG
CTCCCACCTCCACCAGGGCCAGAAGACCCCCTGTCTCCCAGCCCCGGGCAGCCCCTGCTGGGCCCCAG
C
TTGGGGCCTGACGGCACTCGGACTTTCTCGCTGTCCCCCTTCCCCAGCCTGGCATCAGGGGAGAGACTG
ATG
ATGCCCCCAGCCGCCTTCAAGGGAGAGGCGGGCGGCCTGCTGGTGTTCCCCCCAGCCTTCTATGGCG
CC
AAGCCCCCCACAGCCCCTGCCACCCCGGCCCCTGGCCCTGAGCCACTGGGCGGTCCTGAGCCCGCGGA
T
GGTGGTGGGGGCGGAGCGGCGGGGCCCGGGGCAGAGGAGGAGCAGCTGGACACGGCAGAGATCGCCTTC
CAG
GTGAAGGAGCAGCTGCTGAAACACAACATCGGGCAGCGGGTGTTTGGGCATTACGTGCTGGGGCTGT
CG
CAGGGCTCGGTCAGCGAGATCCTAGCCCGGCCCAAGCCCTGGCGCAAGCTCACGGTGAAGGGCAAGGA
G
CCCTTCATCAAGATGAAGCAGTTCCTGTCGGATGAGCAGAATGTACTGGCGCTCAGGACCATCCAAGTG
CGG
CAGCGAGGCAGCATCACCCCGAGAATCCGCACGCCTGAGACAGGCTCAGACGACGCCATCAAGAGCA
TT
CTAGAGCAGGCCAAGAAGGAGATCGAGTCGCAGAAGGGCGGCGAGCCCAAGACCTCGGTGGCCCCGCT
G
AGCATCGCCAACGGCACGACCCCCGCCAGCACCTCGGAGGACGCCATCAAGAGCATCCTGGAGCAGGCA
CGC
CGTGAGATGCAGGCGCAACAGCAGGCGCTGCTGGAGATGGAGGTGGCGCCCAGGGGCCGCTCGGTGC
CC
CCCTCGCCCCCGGAGCGGCCATCACTGGCCACCGCGAGCCAGAACGGGGCCCCGGCCTTGGTGAAGCA
G
GAGGAGGGCAGCGGGGGCCCCGCGCAGGCGCCGCTCCCGGTCCTGTCCCCCGCCGCCTTCGTGCAGAGC
ATC
ATCCGCAAGGTCAAGTCCGAGATCGGCGACGCCGGCTACTTCGACCACCACTGGGCCTCCGACCGCG
GC
CTGCTCAGCCGCCCCTACGCCTCCGTGTCGCCCTCGCTGTCCTCCTCCTCCTCCTCTGGCTACTCTGG
C
CAGCCCAACGGCCGCGCCTGGCCCCGCGGGGACGAGGCCCCTGTGCCCCCCGAGGACGAGGCGGCGGCA
GGG
GCGGAGGACGAACCCCCCAGGACGGGCGAGCTCAAGGCTGAGGGCGCGACGGCCGAGGCGGGCGCGC
GG
CTGCCCTACTACCCGGCCTACGTGCCGCGCACCCTGAAGCCCACCGTGCCGCCGCTGACCCCCGAGCA
G
TACGAGCTGTACATGTACCGTGAGGTAGACACGCTGGAGCTCACCCGCCAGGTCAAGGAGAAGCTGGCC
AAG
AACGGCATCTGCCAGAGGATCTTCGGGGAGAAGGTGCTGGGCCTGTCACAGGGCAGCGTGAGCGACA
TG
CTGTCCCGGCCGAAGCCATGGAGCAAGCTGACGCAGAAGGGGCGGGAGCCCTTCATCCGCATGCAGCT
G
TGGCTCTCTGACCAGCTCGGCCAGGCAGTGGGCCAGCAGCCTGGTGCCTCCCAGGCCAGTCCCACAGAA
CCA
AGGTCCTCACCATCCCCACCCCCCAGCCCCACAGAGCCTGAGAAGAGCTCCCAGGAGCCGTTGAGCC
TG
TCCCTGGAGAGCAGCAAGGAGAACCAGCAGCCAGAGGGCCGCTCCAGCTCCTCGTTGAGCGGGAAGAT
G
TACTCAGGCAGCCAGGCCCCAGGGGGCATCCAGGAGATCGTGGCCATGTCCCCCGAGCTGGACACGTAC
TCC
ATCACCAAGAGGGTGAAGGAGGTCCTCACAGACAACAATCTAGGGCAGCGGCTGTTTGGGGAAAGCA
TC
CTGGGTCTGACACAGGGCTCCGTGTCTGACCTGCTGTCCCGGCCCAAACCCTGGCACAAGCTGAGCCT
G
AAGGGGCGGGAGCCTTTTGTCCGCATGCAGCTGTGGCTCAATGACCCCCATAACGTGGAGAAGCTGAGG
GAT
ATGAAGAAGCTGGAGAAGAAAGCCTACCTGAAACGTCGCTATGGCCTCATCAGCACCGGCTCAGACA
GT
GAGTCCCCGGCCACCCGCTCAGAGTGCCCCAGCCCCTGCCTGCAGCCCCAGGACCTGAGCCTCCTGCA
G
ATCAAGAAGCCCCGGGTGGTGCTGGCACCCGAGGAGAAGGAGGCACTGCGGAAGGCCTATCAGCTGGAA
CCC
TACCCCTCGCAGCAGACCATCGAGCTCCTCTCCTTCCAGCTCAACCTCAAGACCAACACCGTCATCA
AC
TGGTTCCACAACTACAGGTCCCGGATGCGCCGGGAGATGTTGGTGGAGGGGACCCAGGATGAGCCAGA
C
CTTGATCCAAGCGGGGGTCCTGGAATCCTACCGCCAGGCCACTCCCACCCAGACCCCACCCCGCAGAGC
CCT
GACTCTGAGACTGAGGACCAGAAGCCAACCGTGAAGGAACTGGAGCTTCAGGAGGGCCCTGAGGAGA
AC
AGCACACCCCTGACCACCCAGGACAAGGCCCAAGTGAGGATCAAGCAGGAACAGATGGAGGAGGATGC
T
GAGGAAGAGGCAGGCAGCCAGCCCCAGGACTCAGGGGAGCTGGACAAAGGCCAAGGTCCCCCCAAAGAG
GAG
CATCCCGACCCTCCGGGTAATGATGGACTCCCAAAAGTGGCTCCCGGGCCCCTCCTTCCAGGTGGAT
CC
ACCCCAGACTGTCCCTCACTTCATCCCCAACAGGAGAGTGAGGCCGGGGAGCGACTTCACCCGGACCC
T
TTAAGTTTTAAGTCAGCCTCAGAGTCCTCACGCTGCAGCCTGGAGGTGTCACTGAACTCGCCCTCGGCC
GCC
TCCTCACCAGGCCTCATGATGTCTGTGTCACCTGTCCCCTCCTCCTCAGCTCCCATCTCCCCATCCC
CA
CCTGGCGCCCCCCCTGCCAAAGTGCCGAGTGCCAGCCCCACTGCTGACATGGCTGGAGCCTTGCACCC
C
AGTGCCAAGGTGAACCCCAACTTGCAGCGGCGGCATGAGAAGATGGCCAATCTGAACAACATCATTTAC
CGA
GTAGAGCGGGCTGCCAATCGGGAGGAGGCCCTGGAGTGGGAGTTCTGA


Translation (1486 aa):
MAANVGSMFQYWKRFDLRRLQKELNSVASELSARQEESEHSHKHLIELRREFKKNVPEEIREMVAPVLKS
F
QAE
VVALSKRSQEAEAAFLSVYKQLIEAPDPVPVFEAARSLDDRLQPPSFDPSGQPRRDLHTSWKRNPE
L
LSPK
EQREGTSPAGPTLTEGSRLPGIPGKALLTETLLQRNEAEKQKGLQEVQITLAARLGEAEEKIKVL
H
S
ALKATQAELLELRRKYDEEAASKADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCS
P
QGPSG
DKVNFTLCSGPRLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIE
K
LEEKLQAQSDYEEIKTEL
SILKAMKLASSTCSLPQGMAKPEDSLLIAKEAFFPTQKFLLEKPSLLASPE
E
DPSEDDSIKDSLGTEQSYPSPQQLPPPPGPEDPLSPSPGQPLLGPSLGPDGTRTFSLSPFPSLASGERL
M
MPPAAFKGEAGGLLVFPPAFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAEEEQLDTAEIAF
Q
VKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRTIQV
R
QR
GSITPRIRTPETGSDDAIKSILEQAKKEIESQKGGEPKTSVAPLSIANGTTPASTSEDAIKSILEQA
R
REMQAQQQALLEMEVAPRGRSVPPSPPERPSLATASQNGAPALVKQEEGSGGPAQAPLPVLSPAAFVQS
I
IRKVKSEIGDAGYFDHHWASDRGLLSRPYASVSPSLSSSSSSGYSGQPNGRAWPRGDEAPVPPEDEAAA
G
AEDEPPRTGELKAEGATAEAGARLPYYPAYVPRTLKPTVPPLTPEQYELYMYREVDTLELTRQVKEKLA
K
NGICQRIFGEK
VLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAVGQQPGASQASPTE
P
RSSPSPPPSPTEPEKSSQEPLSLSLESSKENQQPEGRSSSSLSGKMYSGSQAPGGIQEIVAMSPELDTY
S
ITKRVKEVLTDNNL
GQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLR
D
MKKLEKK
AYLKRRYGLISTGSDSESPATRSECPSPCLQPQDLSLLQIKKPRVVLAPEEKEALRKAYQLE
P
YPSQQTIELLSFQLNLKTNTVINWFHNY
RSRMRREMLVEGTQDEPDLDPSGGPGILPPGHSHPDPTPQS
P
DSETEDQKPTVKELELQEGPEENSTPLTTQDKAQVRIKQEQMEEDAEEEAGSQPQDSGELDKGQGPPKE
E
HPDPPGNDGLPKVAPGPLLPGGSTPDCPSLHPQQESEAGERLHPDPLSFKSASESSRCSLEVSLNSPSA
A
SSPGLMMSVSPVPSSSAPISPSPPGAPPAKVPSASPTADMAGALHPSAKVNPNLQRRHEKMANLNNIIY
R
VERAANREEALEWEF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser