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Report for CCDS19557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19557.1 Public Mus musculus 5 Dao 23 108 98 CCDS HistoryNCBI Gene:13142Re-query CCDS DB by CCDS ID:19557.1Re-query CCDS DB by GeneID:13142See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112292.8 ENSMUSP00000107911.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112292.8Link to Ensembl Protein Viewer:ENSMUSP00000107911.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112292Re-query CCDS DB by Protein ID:ENSMUSP00000107911
Original member Current member EBI ENSMUST00000161610.5 ENSMUSP00000125588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161610.5Link to Ensembl Protein Viewer:ENSMUSP00000125588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161610Re-query CCDS DB by Protein ID:ENSMUSP00000125588
Original member Current member NCBI NM_001286396.1 NP_001273325.1 Accepted alive Link to Nucleotide Sequence:NM_001286396.1Link to Protein Sequence:NP_001273325.1Re-query CCDS DB by Nucleotide ID:NM_001286396Re-query CCDS DB by Protein ID:NP_001273325Link to BLAST:NP_001273325.1
Original member Current member NCBI NM_010018.3 NP_034148.2 Accepted alive Link to Nucleotide Sequence:NM_010018.3Link to Protein Sequence:NP_034148.2Re-query CCDS DB by Nucleotide ID:NM_010018Re-query CCDS DB by Protein ID:NP_034148Link to BLAST:NP_034148.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273325.1 345 P18894 345 100% 0 0
NP_034148.2 345 P18894 345 100% 0 0

Chromosomal Locations for CCDS 19557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114009839 114010029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114012528 114012642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114013929 114014005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114015145 114015210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114017656 114017710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114019012 114019113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114019925 114020007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114020924 114021041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114023828 114023926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114024775 114024906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCGCGTGGCCGTGATCGGAGCAGGAGTCATTGGGCTCTCCACAGCCCTCTGCATTCATGAGCGTTACC
ACCCAACACAGCCACTGCACATGAAGATCTATGCAGATCGATTCACCCCGTTCACCACGAGCGATGTGGC
CGCCGGCCTCTGGCAGCCTTATCTCTCTGACCCCAGCAACCCTCAGGAGGCGGAGTGGAGCCAGCAAACG
TTTGATTACCTGCTGAGCTGCCTCCATTCTCCAAACGCTGAAAAAATGGGCCTGGCCCTAATCTCAGGCT
ACAACCTCTTCCGAGATGAAGTTCCGGACCCTTTCTGGAAAAACGCAGTTCTGGGATTCCGGAAGCTGAC
CCCCAGTGAGATGGACCTGTTCCCTGATTATGGCTACGGCTGGTTCAATACAAGCCTCCTTCTAGAGGGG
AAGAGCTACCTGCCATGGCTAACTGAGAGGTTAACTGAGAGGGGAGTGAAGCTTATCCATCGGAAGGTGG
AGTCTCTCGAAGAGGTGGCAAGAGGAGTGGATGTGATTATCAACTGCACCGGGGTGTGGGCCGGGGCCCT
GCAAGCAGATGCCTCCCTGCAGCCAGGCCGGGGCCAGATCATCCAGGTGGAGGCCCCTTGGATTAAACAC
TTCATCCTCACCCATGATCCTAGCCTTGGTATCTACAACTCTCCGTACATCATCCCAGGTTCCAAGACAG
TTACGCTCGGGGGTATATTCCAGCTGGGGAACTGGAGCGGGTTAAACAGCGTCCGTGACCACAATACCAT
TTGGAAGAGCTGCTGTAAACTGGAGCCCACCCTGAAGAATGCAAGAATTGTGGGTGAACTCACTGGCTTC
CGGCCAGTCCGGCCTCAGGTCCGGCTAGAAAGAGAATGGCTTCATTTTGGATCTTCAAGTGCAGAGGTCA
TCCACAACTATGGTCATGGAGGTTACGGGCTCACAATCCACTGGGGTTGTGCAATGGAGGCGGCCAACCT
CTTCGGGAAAATTCTAGAGGAAAAGAAGTTGTCCAGGTTGCCTCCCTCCCACCTCTGA

Translation (345 aa):
MRVAVIGAGVIGLSTALCIHERYHPTQPLHMKIYADRFTPFTTSDVAAGLWQPYLSDPSNPQEAEWSQQT
FDYLLSCLHSPNAEKMGLALISGYNLFRDEVPDPFWKNAVLGFRKLTPSEMDLFPDYGYGWFNTSLLLEG
KSYLPWLTERLTERGVKLIHRKVESLEEVARGVDVIINCTGVWAGALQADASLQPGRGQIIQVEAPWIKH
FILTHDPSLGIYNSPYIIPGSKTVTLGGIFQLGNWSGLNSVRDHNTIWKSCCKLEPTLKNARIVGELTGF
RPVRPQVRLEREWLHFGSSSAEVIHNYGHGGYGLTIHWGCAMEAANLFGKILEEKKLSRLPPSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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