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Report for CCDS7487.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7487.2 Public Homo sapiens 10 ERLIN1 24 110 108 CCDS HistoryNCBI Gene:10613Re-query CCDS DB by CCDS ID:7487.2Re-query CCDS DB by GeneID:10613See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7487.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407654.7 ENSP00000384900.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407654.7Link to Ensembl Protein Viewer:ENSP00000384900.3Re-query CCDS DB by Nucleotide ID:ENST00000407654Re-query CCDS DB by Protein ID:ENSP00000384900
Original member Current member EBI ENST00000421367.7 ENSP00000410964.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421367.7Link to Ensembl Protein Viewer:ENSP00000410964.2Re-query CCDS DB by Nucleotide ID:ENST00000421367Re-query CCDS DB by Protein ID:ENSP00000410964
Original member Current member NCBI NM_001100626.2 NP_001094096.1 Accepted alive Link to Nucleotide Sequence:NM_001100626.2Link to Protein Sequence:NP_001094096.1Re-query CCDS DB by Nucleotide ID:NM_001100626Re-query CCDS DB by Protein ID:NP_001094096Link to BLAST:NP_001094096.1
Original member Current member NCBI NM_001347857.2 NP_001334786.1 Accepted alive Link to Nucleotide Sequence:NM_001347857.2Link to Protein Sequence:NP_001334786.1Re-query CCDS DB by Nucleotide ID:NM_001347857Re-query CCDS DB by Protein ID:NP_001334786Link to BLAST:NP_001334786.1
Original member Current member NCBI NM_001347859.2 NP_001334788.1 Accepted alive Link to Nucleotide Sequence:NM_001347859.2Link to Protein Sequence:NP_001334788.1Re-query CCDS DB by Nucleotide ID:NM_001347859Re-query CCDS DB by Protein ID:NP_001334788Link to BLAST:NP_001334788.1
Original member Current member NCBI NM_001347860.2 NP_001334789.1 Accepted alive Link to Nucleotide Sequence:NM_001347860.2Link to Protein Sequence:NP_001334789.1Re-query CCDS DB by Nucleotide ID:NM_001347860Re-query CCDS DB by Protein ID:NP_001334789Link to BLAST:NP_001334789.1
Original member Current member NCBI NM_001347861.2 NP_001334790.1 Accepted alive Link to Nucleotide Sequence:NM_001347861.2Link to Protein Sequence:NP_001334790.1Re-query CCDS DB by Nucleotide ID:NM_001347861Re-query CCDS DB by Protein ID:NP_001334790Link to BLAST:NP_001334790.1
Original member Current member NCBI NM_006459.4 NP_006450.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006459.4Link to Protein Sequence:NP_006450.2Re-query CCDS DB by Nucleotide ID:NM_006459Re-query CCDS DB by Protein ID:NP_006450Link to BLAST:NP_006450.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094096.1 348 O75477 348 100% 0 0
NP_001334786.1 348 O75477 348 100% 0 0
NP_001334788.1 348 O75477 348 100% 0 0
NP_001334789.1 348 O75477 348 100% 0 0
NP_001334790.1 348 O75477 348 100% 0 0
NP_006450.2 348 O75477 348 100% 0 0

Chromosomal Locations for CCDS 7487.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100152131 100152352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100154860 100154939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100156145 100156234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100164004 100164095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100167348 100167406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100174208 100174281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100175945 100176070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100178133 100178194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100179201 100179247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100183756 100183837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100185514 100185626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGAATATGACTCAAGCCCGGGTTCTGGTGGCTGCAGTGGTGGGGTTGGTGGCTGTCCTGCTCTACGCCT
CCATCCACAAGATTGAGGAGGGCCATCTGGCTGTGTACTACAGGGGAGGAGCTTTACTAACTAGCCCCAG
TGGACCAGGCTATCATATCATGTTGCCTTTCATTACTACGTTCAGATCTGTGCAGACAACACTACAAACT
GATGAAGTTAAAAATGTGCCTTGTGGAACAAGTGGTGGGGTCATGATCTATATTGACCGAATAGAAGTGG
TTAATATGTTGGCTCCTTATGCAGTGTTTGATATCGTGAGGAACTATACTGCAGATTATGACAAGACCTT
AATCTTCAATAAAATCCACCATGAGCTGAACCAGTTCTGCAGTGCCCACACACTTCAGGAAGTTTACATT
GAATTGTTTGATCAAATAGATGAAAACCTGAAGCAAGCTCTGCAGAAAGACTTAAACCTCATGGCCCCAG
GTCTCACTATACAGGCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAGTT
AATGGAGGCTGAGAAGACAAAACTCCTTATAGCTGCACAGAAACAAAAGGTTGTGGAAAAAGAAGCTGAG
ACAGAGAGGAAAAAGGCAGTTATAGAAGCAGAGAAGATTGCACAAGTGGCAAAAATTCGGTTTCAGCAGA
AAGTGATGGAAAAAGAAACTGAAAAGCGCATTTCTGAAATCGAAGATGCTGCATTCCTGGCCCGAGAGAA
AGCGAAAGCAGATGCTGAATATTATGCTGCACACAAATATGCCACCTCAAACAAGCACAAGTTGACCCCG
GAATATCTGGAGCTCAAAAAGTACCAGGCCATTGCTTCTAACAGTAAGATCTATTTTGGCAGCAACATCC
CTAACATGTTCGTGGACTCCTCATGTGCTTTGAAATATTCAGATATTAGGACTGGAAGAGAAAGCTCACT
CCCCTCTAAGGAGGCTCTTGAACCCTCTGGAGAGAACGTCATCCAAAACAAAGAGAGCACAGGTTGA

Translation (348 aa):
MNMTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQT
DEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYI
ELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAE
TERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKAKADAEYYAAHKYATSNKHKLTP
EYLELKKYQAIASNSKIYFGSNIPNMFVDSSCALKYSDIRTGRESSLPSKEALEPSGENVIQNKESTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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