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Report for CCDS3824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3824.1 Public Homo sapiens 4 GPM6A 24 110 108 CCDS HistoryNCBI Gene:2823Re-query CCDS DB by CCDS ID:3824.1Re-query CCDS DB by GeneID:2823See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280187.11 ENSP00000280187.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000280187.11Link to Ensembl Protein Viewer:ENSP00000280187.7Re-query CCDS DB by Nucleotide ID:ENST00000280187Re-query CCDS DB by Protein ID:ENSP00000280187
Original member Current member EBI ENST00000393658.7 ENSP00000377268.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393658.7Link to Ensembl Protein Viewer:ENSP00000377268.2Re-query CCDS DB by Nucleotide ID:ENST00000393658Re-query CCDS DB by Protein ID:ENSP00000377268
Original member Current member NCBI NM_005277.5 NP_005268.1 Accepted alive Link to Nucleotide Sequence:NM_005277.5Link to Protein Sequence:NP_005268.1Re-query CCDS DB by Nucleotide ID:NM_005277Re-query CCDS DB by Protein ID:NP_005268Link to BLAST:NP_005268.1
Original member Current member NCBI NM_201591.3 NP_963885.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201591.3Link to Protein Sequence:NP_963885.1Re-query CCDS DB by Nucleotide ID:NM_201591Re-query CCDS DB by Protein ID:NP_963885Link to BLAST:NP_963885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005268.1 278 P51674-1 278 100% 0 0
NP_963885.1 278 P51674-1 278 100% 0 0

Chromosomal Locations for CCDS 3824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 175634905 175635057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175640129 175640194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175640753 175640829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175651834 175651987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175673680 175673836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175701575 175701767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175812191 175812227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGAAGAGAATATGGAAGAGGGACAGACACAAAAAGGGTGTTTTGAATGCTGTATCAAATGCCTGGGGG
GCATTCCCTATGCCTCTCTGATTGCCACCATCCTGCTCTATGCGGGTGTTGCCCTGTTCTGTGGCTGCGG
TCATGAAGCGCTTTCTGGAACTGTCAACATTCTGCAAACCTACTTTGAGATGGCAAGAACTGCTGGAGAC
ACACTGGATGTTTTTACCATGATTGACATCTTTAAGTATGTGATCTACGGCATCGCAGCTGCGTTCTTTG
TGTATGGCATTTTGCTGATGGTGGAAGGTTTCTTCACAACTGGGGCCATCAAAGATCTCTATGGGGATTT
CAAAATCACCACTTGTGGCAGATGTGTGAGCGCTTGGTTCATTATGCTGACATATCTTTTCATGTTGGCC
TGGCTGGGAGTCACGGCTTTCACCTCACTGCCAGTTTACATGTACTTCAATCTGTGGACCATCTGCCGGA
ACACCACATTAGTGGAGGGAGCAAATCTCTGCTTGGACCTTCGTCAGTTTGGAATTGTGACAATTGGAGA
GGAAAAGAAAATTTGTACTGTCTCTGAGAATTTCTTGAGGATGTGCGAATCTACTGAGCTGAACATGACC
TTCCACTTGTTTATTGTGGCACTTGCTGGAGCTGGGGCAGCAGTCATTGCTATGGTTCACTACCTTATGG
TTCTGTCTGCCAACTGGGCCTATGTGAAAGACGCCTGCCGGATGCAGAAGTATGAAGACATCAAGTCGAA
GGAAGAGCAAGAGCTTCATGACATCCACTCTACTCGCTCCAAAGAGCGGCTCAATGCATACACATAA

Translation (278 aa):
MEENMEEGQTQKGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGD
TLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIMLTYLFMLA
WLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICTVSENFLRMCESTELNMT
FHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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