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Report for CCDS3163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3163.1 Public Homo sapiens 3 MBNL1 24 110 108 CCDS HistoryNCBI Gene:4154Re-query CCDS DB by CCDS ID:3163.1Re-query CCDS DB by GeneID:4154See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3163.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324210.10 ENSP00000319429.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324210.10Link to Ensembl Protein Viewer:ENSP00000319429.5Re-query CCDS DB by Nucleotide ID:ENST00000324210Re-query CCDS DB by Protein ID:ENSP00000319429
Original member Current member NCBI NM_001376826.1 NP_001363755.1 Accepted alive Link to Nucleotide Sequence:NM_001376826.1Link to Protein Sequence:NP_001363755.1Re-query CCDS DB by Nucleotide ID:NM_001376826Re-query CCDS DB by Protein ID:NP_001363755Link to BLAST:NP_001363755.1
Original member Current member NCBI NM_001376827.1 NP_001363756.1 Accepted alive Link to Nucleotide Sequence:NM_001376827.1Link to Protein Sequence:NP_001363756.1Re-query CCDS DB by Nucleotide ID:NM_001376827Re-query CCDS DB by Protein ID:NP_001363756Link to BLAST:NP_001363756.1
Original member Current member NCBI NM_001376828.1 NP_001363757.1 Accepted alive Link to Nucleotide Sequence:NM_001376828.1Link to Protein Sequence:NP_001363757.1Re-query CCDS DB by Nucleotide ID:NM_001376828Re-query CCDS DB by Protein ID:NP_001363757Link to BLAST:NP_001363757.1
Original member Current member NCBI NM_001376829.1 NP_001363758.1 Accepted alive Link to Nucleotide Sequence:NM_001376829.1Link to Protein Sequence:NP_001363758.1Re-query CCDS DB by Nucleotide ID:NM_001376829Re-query CCDS DB by Protein ID:NP_001363758Link to BLAST:NP_001363758.1
Original member Current member NCBI NM_001387786.1 NP_001374715.1 Accepted alive Link to Nucleotide Sequence:NM_001387786.1Link to Protein Sequence:NP_001374715.1Re-query CCDS DB by Nucleotide ID:NM_001387786Re-query CCDS DB by Protein ID:NP_001374715Link to BLAST:NP_001374715.1
Original member Current member NCBI NM_021038.5 NP_066368.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021038.5Link to Protein Sequence:NP_066368.2Re-query CCDS DB by Nucleotide ID:NM_021038Re-query CCDS DB by Protein ID:NP_066368Link to BLAST:NP_066368.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363755.1 382 Q9NR56-5 382 100% 0 0
NP_001363756.1 382 Q9NR56-5 382 100% 0 0
NP_001363757.1 382 Q9NR56-5 382 100% 0 0
NP_001363758.1 382 Q9NR56-5 382 100% 0 0
NP_001374715.1 382 Q9NR56-5 382 100% 0 0
NP_066368.2 382 Q9NR56-5 382 100% 0 0

Chromosomal Locations for CCDS 3163.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152300194 152300367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152414941 152415111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152432717 152432920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152445282 152445539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152447620 152447773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152455542 152455577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152456267 152456361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152459271 152459327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGCTGTTAGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGA
GGGGGACTTGCTCACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAA
TGGACGAGTAATCGCCTGCTTTGATTCATTGAAAGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCAT
CCACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGG
CCATGTTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAAT
GTTTTCAGTTGCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTT
TCTCCAAGCCTGGTCCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCC
CTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGA
GTACCAACGTGGCAATTGCAACCGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATG
ATTGACACCAATGACAACACAGTCACTGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGT
GCAAATACTTTCATCCCCCTGCACATTTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGC
TGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCCATGGGAATTCCTCAAGCTGTACTTCCCCCATTACCA
AAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAAC
AGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATTGTGCATGAC
ACCCGCTACAAGTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCT
GCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAGATACCCATAATATCTGCCGAACATCTGA
CTAGCCACAAGTATGTTACCCAGATGTAG

Translation (382 aa):
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLH
PPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSVAPSLATNASAAAFNPYLGPV
SPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTM
IDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLP
KRPALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTS
ATSVPFAATATANQIPIISAEHLTSHKYVTQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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