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Report for CCDS3662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3662.1 Public Homo sapiens 4 SLC9B2 24 110 108 CCDS HistoryNCBI Gene:133308Re-query CCDS DB by CCDS ID:3662.1Re-query CCDS DB by GeneID:133308See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3662.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362026.7 ENSP00000354574.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000362026.7Link to Ensembl Protein Viewer:ENSP00000354574.3Re-query CCDS DB by Nucleotide ID:ENST00000362026Re-query CCDS DB by Protein ID:ENSP00000354574
Original member Current member EBI ENST00000394785.9 ENSP00000378265.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394785.9Link to Ensembl Protein Viewer:ENSP00000378265.3Re-query CCDS DB by Nucleotide ID:ENST00000394785Re-query CCDS DB by Protein ID:ENSP00000378265
Original member Current member NCBI NM_001370201.1 NP_001357130.1 Accepted alive Link to Nucleotide Sequence:NM_001370201.1Link to Protein Sequence:NP_001357130.1Re-query CCDS DB by Nucleotide ID:NM_001370201Re-query CCDS DB by Protein ID:NP_001357130Link to BLAST:NP_001357130.1
Original member Current member NCBI NM_001370202.1 NP_001357131.1 Accepted alive Link to Nucleotide Sequence:NM_001370202.1Link to Protein Sequence:NP_001357131.1Re-query CCDS DB by Nucleotide ID:NM_001370202Re-query CCDS DB by Protein ID:NP_001357131Link to BLAST:NP_001357131.1
Original member Current member NCBI NM_178833.7 NP_849155.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178833.7Link to Protein Sequence:NP_849155.2Re-query CCDS DB by Nucleotide ID:NM_178833Re-query CCDS DB by Protein ID:NP_849155Link to BLAST:NP_849155.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357130.1 537 Q86UD5-1 537 100% 0 0
NP_001357131.1 537 Q86UD5-1 537 100% 0 0
NP_849155.2 537 Q86UD5-1 537 100% 0 0

Chromosomal Locations for CCDS 3662.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 103026370 103026591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103028747 103028883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103031700 103031808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103043296 103043445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103044890 103044996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103047051 103047226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103048893 103049020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103050240 103050382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103057801 103057971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103066327 103066507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103067461 103067550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGGGGATGAAGATAAAAGAATTACATATGAAGATTCAGAACCATCCACAGGAATGAATTACACGCCCT
CCATGCATCAAGAAGCACAGGAGGAGACAGTTATGAAGCTCAAAGGTATAGATGCAAATGAACCAACAGA
AGGAAGTATTCTTTTGAAAAGCAGTGAAAAAAAGCTACAAGAAACACCAACTGAAGCAAATCACGTACAA
AGACTGAGACAAATGCTGGCTTGCCCTCCACATGGTTTACTGGACAGGGTCATAACAAATGTTACCATCA
TTGTTCTTCTGTGGGCTGTAGTTTGGTCAATTACTGGCAGTGAATGTCTTCCTGGAGGAAACCTATTTGG
AATTATAATCCTATTCTATTGTGCCATCATTGGTGGTAAACTTTTGGGGCTTATTAAGTTACCTACATTG
CCTCCACTGCCTTCTCTTCTTGGCATGCTGCTTGCAGGGTTTCTCATCAGAAATATCCCAGTCATCAACG
ATAATGTGCAGATCAAGCACAAGTGGTCTTCCTCTTTGAGAAGCATAGCCCTGTCTATCATTCTGGTTCG
TGCTGGCCTTGGTCTGGATTCAAAGGCCCTGAAGAAGTTAAAGGGCGTTTGTGTAAGACTGTCCATGGGT
CCCTGTATTGTGGAGGCGTGCACATCTGCTCTTCTTGCCCATTACCTGCTGGGTTTACCATGGCAATGGG
GATTTATACTGGGTTTTGTTTTAGGTGCTGTATCTCCAGCTGTTGTGGTGCCTTCAATGCTCCTTTTGCA
GGGAGGAGGCTATGGTGTTGAGAAGGGTGTCCCAACCTTGCTCATGGCAGCTGGCAGCTTCGATGACATT
CTGGCCATCACTGGCTTCAACACATGCTTGGGCATAGCCTTTTCCACAGGCTCTACTGTCTTTAATGTCC
TCAGAGGAGTTTTGGAGGTGGTAATTGGTGTGGCAACTGGATCTGTTCTTGGATTTTTCATTCAGTACTT
TCCAAGCCGTGACCAGGACAAACTTGTGTGTAAGAGAACATTCCTTGTGTTGGGGTTGTCTGTGCTAGCT
GTGTTCAGCAGTGTGCATTTTGGTTTCCCTGGATCAGGAGGACTGTGCACGTTGGTCATGGCTTTCCTTG
CAGGCATGGGATGGACCAGCGAAAAGGCAGAGGTTGAAAAGATAATTGCAGTTGCCTGGGACATTTTTCA
GCCCCTTCTTTTTGGACTAATTGGAGCAGAGGTATCTATTGCATCTCTCAGACCAGAAACTGTAGGCCTT
TGTGTTGCCACCGTAGGCATTGCAGTATTGATACGAATTTTGACTACATTTCTGATGGTGTGTTTTGCTG
GTTTTAACTTAAAAGAAAAGATATTTATTTCTTTTGCATGGCTTCCAAAGGCCACAGTTCAGGCTGCAAT
AGGATCTGTGGCTTTGGACACAGCAAGGTCACATGGAGAGAAACAATTAGAAGACTATGGAATGGATGTG
TTGACAGTGGCATTTTTGTCCATCCTCATCACAGCCCCAATTGGAAGTCTGCTTATTGGTTTACTGGGCC
CCAGGCTTCTGCAGAAAGTTGAACATCAAAATAAAGATGAAGAAGTTCAAGGAGAGACTTCTGTGCAAGT
TTAG

Translation (537 aa):
MGDEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANEPTEGSILLKSSEKKLQETPTEANHVQ
RLRQMLACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGGNLFGIIILFYCAIIGGKLLGLIKLPTL
PPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMG
PCIVEACTSALLAHYLLGLPWQWGFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDI
LAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLA
VFSSVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASLRPETVGL
CVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQAAIGSVALDTARSHGEKQLEDYGMDV
LTVAFLSILITAPIGSLLIGLLGPRLLQKVEHQNKDEEVQGETSVQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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