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Report for CCDS92580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92580.1 Public Homo sapiens 19 TDRD12 24 110 108 CCDS HistoryNCBI Gene:91646Re-query CCDS DB by CCDS ID:92580.1Re-query CCDS DB by GeneID:91646See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 92580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000639142.2 ENSP00000492643.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000639142.2Link to Ensembl Protein Viewer:ENSP00000492643.2Re-query CCDS DB by Nucleotide ID:ENST00000639142Re-query CCDS DB by Protein ID:ENSP00000492643
Original member Current member NCBI NM_001366102.1 NP_001353031.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366102.1Link to Protein Sequence:NP_001353031.1Re-query CCDS DB by Nucleotide ID:NM_001366102Re-query CCDS DB by Protein ID:NP_001353031Link to BLAST:NP_001353031.1

Chromosomal Locations for CCDS 92580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 32720073 32720096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32731725 32731883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32738856 32738992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32742781 32742900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32748476 32748531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32749784 32749869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32755992 32756181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32757038 32757130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32772753 32772850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32773456 32773532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32777149 32777229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32790531 32790591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32790964 32791068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32794628 32794813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32797735 32797891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32798308 32798435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32800167 32800358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32800644 32800772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32801756 32801873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32802656 32802789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32802922 32803142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32807549 32807648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32810093 32810277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32811210 32811420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32813684 32813776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32815448 32815620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32818089 32818157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32821033 32821139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32826098 32826161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32826244 32826357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32826445 32826598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32826683 32826749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32827164 32827267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3993 nt):
ATGCTCCAGCTCCTGGTGCTGAAGATTGAAGATCCAGGTTGCTTCTGGGTTATTATAAAAGGGTGTAGTC
CCTTTTTAGATCATGATGTCGATTATCAAAAATTAAATAGTGCCATGAATGACTTCTACAACAGCACGTG
TCAAGATATAGAAATAAAACCCTTAACATTGGAAGAAGGACAGGTGTGTGTGGTCTATTGTGAGGAGCTA
AAGTGCTGGTGCAGGGCCATTGTCAAATCAATTACGTCTTCCGCAGACCAGTACCTGGCAGAATGTTTCC
TTGTGGACTTTGCCAAGAACATTCCAGTCAAATCTAAAAACATCCGAGTTGTAGTAGAATCGTTTATGCA
GCTTCCCTATAGAGCAAAAAAATTCAGCCTGTACTGCACAAAGCCTGTCACATTACACATTGACTTCTGC
CGAGACAGTACTGACATTGTACCTGCCAAGAAGTGGGACAATGCAGCTATTCAGTACTTTCAGAACCTTC
TGAAAGCAACTACCCAGGTGGAAGCCAGATTATGTGCTGTGGAAGAAGATACATTTGAGGTTTACCTTTA
TGTAACTATAAAAGATGAAAAAGTTTGTGTTAATGATGATCTTGTTGCAAAGAACTATGCTTGTTATATG
TCACCTACAAAGAATAAAAACCTTGATTATTTAGAAAAACCAAGATTGAATATAAAATCAGCACCCTCCT
TCAATAAACTCAATCCAGCACTTACACTCTGGCCAATGTTTTTGCAAGGAAAAGATGTTCAAGGAATGGA
AGATTCACATGGTGTAAATTTTCCGGCACAATCTCTGCAACATACATGGTGCAAGGGTATTGTCGGTGAC
CTCAGGCCAACAGCCACAGCACAGGACAAAGCTGTAAAATGTAATATGGATTCATTGAGAGATTCACCTA
AAGACAAATCTGAAAAGAAACACCATTGCATCTCTTTAAAAGATACAAATAAGCGTGTTGAATCCTCAGT
GTACTGGCCAGCAAAAAGAGGCATAACCATATATGCTGATCCAGATGTACCAGAAGCAAGTGCTTTAAGT
CAGAAGTCAAATGAGAAACCTCTTAGATTGACTGAGAAGAAAGAATATGATGAGAAGAATAGCTGTGTGA
AATTACTGCAGTTTTTAAATCCTGATCCTTTGAGAGCTGACGGAATCTCTGATCTCCAGCAGTTGCAGAA
GCTGAAGGGCCTGCAGCCGCCCGTGGTAGTGCTCCGGAACAAGATCAAGCCCTGCTTAACCATTGACTCG
TCGCCGCTGTCAGCAGACCTGAAGAAGGCTCTTCAAAGAAATAAGTTTCCGGGCCCCAGCCACACTGAAT
CTTACTCTTGGCCTCCCATAGCGCGTGGCTGTGATGTGGTTGTCATTTCTCACTGTGAAAGCAACCCTTT
GCTCTACCTCCTACCAGTGTTGACAGTTTTGCAAACAGGAGCCTGCTACAAGTCATTACCAAGTAGAAAT
GGACCTCTCGCAGTCATCGTGTGCCCTGGGTGGAAGAAGGCCCAATTTATTTTTGAATTATTGGGAGAAT
ATAGCATGTCCTCCAGGCCTCTTCATCCTGTGCTATTAACAATTGGGCTCCATAAAGAGGAAGCCAAAAA
TACAAAGCTTCCAAGGGGCTGTGATGTGATTGTTACGACCCCATACAGCCTGCTGAGGCTTCTCGCCTGT
CAGAGCCTGCTGTTCCTCAGGCTCTGCCACCTGATCCTGGATGAGGTAGAGGTGCTATTCTTGGAAGCCA
ATGAACAGATGTTTGCTATATTAGATAACTTTAAAAAAAATATTGAAGTTGAAGAAAGGGAATCTGCACC
ACATCAGATTGTTGCAGTTGGAGTTCATTGGAACAAACATATAGAACATCTCATCAAAGAGTTCATGAAT
GATCCCTACATTGTGATCACAGCCATGGAAGAGGCTGCTCTCTATGGCAATGTCCAACAGGTAGTACATC
TTTGCCTAGAATGTGAAAAAACTTCTTCTTTACTCCAAGCTCTTGATTTTATTCCAAGTCAGGCACAAAA
GACCTTGATCTTCACCTGCTCTGTAGCTGAAACAGAAATAGTGTGTAAGGTAGTAGAAAGCAGTTCAATA
TTTTGCTTGAAGATGCATAAAGAAATGATTTTTAACTTACAAAATGTTTTAGAACAGTGGAAGAAGAAGT
TAAGTTCTGGCTCTCAAATTATATTAGCCCTCACAGACGACTGCGTCCCACTCTTGGCCATCACCGATGC
CACGTGTGTGATTCACTTCAGTTTCCCTGCCTCACCAAAAGTTTTTGGTGGACGCCTGTATTGCATGTCT
GATCATTTTCACGCTGAACAGGGTTCTCCTGCAGAACAGGGAGATAAGAAAGCCAAATCTGTCTTGCTGC
TGACGGAGAAAGATGCGAGCCATGCGGTGGGCGTCCTGCGCTACTTGGAGCGAGCGGACGCCAAGGTCCC
CGCAGAGCTGTACGAGTTCACCGCAGGAGTTCTGGAAGCCAAAGAAGATAAGAAAGCCGGAAGGCCTCTT
TGTCCATATCTGAAGGCTTTTGGTTTTTGCAAAGACAAAAGGATCTGTCCTGACCGACACCGTATTAATC
CAGAAACGGACTTGCCCAGGAAACTGTCCAGCCAAGCCCTACCTTCATTTGGATACATTAAAATAATACC
TTTTTATATTTTGAATGCAACAAATTACTTTGGCCGTATAGTTGATAAACACATGGATCTTTATGCAACT
CTCAATGCTGAAATGAATGAGTATTTTAAGGATTCTAATAAAACAACTGTGGAAAAGGTGGAGAAGTTTG
GATTGTATGGATTAGCAGAAAAAACGCTTTTTCACAGGGTTCAGGTGTTGGAAGTGAACCAAAAAGAAGA
CGCCTGGGCCCTGGATGACATCCTTGTAGAGTTCATCGATGAAGGCAGGACGGGGCTCGTCACAAGGGAC
CAGCTGCTGCATCTCCCAGAACATTTCCACACACTTCCCCCGCAGGCTGTGGAGTTTATTGTCTGTAGGG
TGAAACCTGCTGACAACGAAATAGAATGGAATCCGAAGGTTACTAGGTACATTCATCATAAAATTGTTGG
AAAATTGCATGATGCAAAAGTGATCCTGGCTTTGGGAAATACAGTTTGGATTGATCCAATGGTGCACATT
ACAAACCTTTCCAGTTTAAAAACCTCTGTCATTGATTATAATGTTCGAGCTGAAATTTTGTCCATGGGCA
TGGGCATTGATAATCCAGAACACATAGAACAACTGAAAAAATTACGCGAAGATGCTAAGATACCAGCTTG
TGAAGAAAGCCTAAGCCAGACCCCGCCGAGGGTGACAGGGACCAGTCCTGCTCAAGACCAGGATCATCCA
TCCGAGGAGCAGGGGGGGCAGGGGACGCCTCCAGCAGAAGATGCTGCTTGCCTGCAGAGCCCCCAGCCTG
AGGACACGGGTGCAGAAGGAGGGGCTGAGTCCAAGACGAGCTCAGAAAACCAGAAGCCTGAAACTTTATC
TGGAAACACTGAAGGTGCCTTCATTAGCAGAACTGCACAGCCGCCTCTGAAAAGCTTCCACCCACAAATA
AAATGGTTCCAAAAAGAAGATGTCGTCATCTTAAAGATAAGAATAAGGAATGTAAAGGACTACAAGTGTC
AGTATTTAAGGGATAGAGTCGTTTTCAGTGCTTGGGTGGGAGACAAATTTTACCTGGCTGATCTGGAGCT
GCGGGGCAACATAAGGAAAGATGACTGCCAATGTGTGATTAGAAACGATGAACCTGTAATCACTCTGGCC
AAAGAGAGAAGGGAGGCATGGTGTCACCTACTCAGACAGAGGAACCCCAACGTGGCTTTTGATTTTGATC
ACTGGGAAGACTGTGAAGAGGACAGCCACTTCCCCAAGGTAGTGAATTCTAAAAACCTGCCGTACACAGT
GACAGAGGTGGTTGAAGACAGTAGCAGCACTTCAGAGGATGACGACAGTGAGAGTGAAAGAGAAGGTGAA
TGA

Translation (1330 aa):
MLQLLVLKIEDPGCFWVIIKGCSPFLDHDVDYQKLNSAMNDFYNSTCQDIEIKPLTLEEGQVCVVYCEEL
KCWCRAIVKSITSSADQYLAECFLVDFAKNIPVKSKNIRVVVESFMQLPYRAKKFSLYCTKPVTLHIDFC
RDSTDIVPAKKWDNAAIQYFQNLLKATTQVEARLCAVEEDTFEVYLYVTIKDEKVCVNDDLVAKNYACYM
SPTKNKNLDYLEKPRLNIKSAPSFNKLNPALTLWPMFLQGKDVQGMEDSHGVNFPAQSLQHTWCKGIVGD
LRPTATAQDKAVKCNMDSLRDSPKDKSEKKHHCISLKDTNKRVESSVYWPAKRGITIYADPDVPEASALS
QKSNEKPLRLTEKKEYDEKNSCVKLLQFLNPDPLRADGISDLQQLQKLKGLQPPVVVLRNKIKPCLTIDS
SPLSADLKKALQRNKFPGPSHTESYSWPPIARGCDVVVISHCESNPLLYLLPVLTVLQTGACYKSLPSRN
GPLAVIVCPGWKKAQFIFELLGEYSMSSRPLHPVLLTIGLHKEEAKNTKLPRGCDVIVTTPYSLLRLLAC
QSLLFLRLCHLILDEVEVLFLEANEQMFAILDNFKKNIEVEERESAPHQIVAVGVHWNKHIEHLIKEFMN
DPYIVITAMEEAALYGNVQQVVHLCLECEKTSSLLQALDFIPSQAQKTLIFTCSVAETEIVCKVVESSSI
FCLKMHKEMIFNLQNVLEQWKKKLSSGSQIILALTDDCVPLLAITDATCVIHFSFPASPKVFGGRLYCMS
DHFHAEQGSPAEQGDKKAKSVLLLTEKDASHAVGVLRYLERADAKVPAELYEFTAGVLEAKEDKKAGRPL
CPYLKAFGFCKDKRICPDRHRINPETDLPRKLSSQALPSFGYIKIIPFYILNATNYFGRIVDKHMDLYAT
LNAEMNEYFKDSNKTTVEKVEKFGLYGLAEKTLFHRVQVLEVNQKEDAWALDDILVEFIDEGRTGLVTRD
QLLHLPEHFHTLPPQAVEFIVCRVKPADNEIEWNPKVTRYIHHKIVGKLHDAKVILALGNTVWIDPMVHI
TNLSSLKTSVIDYNVRAEILSMGMGIDNPEHIEQLKKLREDAKIPACEESLSQTPPRVTGTSPAQDQDHP
SEEQGGQGTPPAEDAACLQSPQPEDTGAEGGAESKTSSENQKPETLSGNTEGAFISRTAQPPLKSFHPQI
KWFQKEDVVILKIRIRNVKDYKCQYLRDRVVFSAWVGDKFYLADLELRGNIRKDDCQCVIRNDEPVITLA
KERREAWCHLLRQRNPNVAFDFDHWEDCEEDSHFPKVVNSKNLPYTVTEVVEDSSSTSEDDDSESEREGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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