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Report for CCDS4278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4278.1 Public Homo sapiens 5 NR3C1 24 110 108 CCDS HistoryNCBI Gene:2908Re-query CCDS DB by CCDS ID:4278.1Re-query CCDS DB by GeneID:2908See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343796.6 ENSP00000343205.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343796.6Link to Ensembl Protein Viewer:ENSP00000343205.2Re-query CCDS DB by Nucleotide ID:ENST00000343796Re-query CCDS DB by Protein ID:ENSP00000343205
Original member Current member EBI ENST00000394464.7 ENSP00000377977.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394464.7Link to Ensembl Protein Viewer:ENSP00000377977.2Re-query CCDS DB by Nucleotide ID:ENST00000394464Re-query CCDS DB by Protein ID:ENSP00000377977
Original member Current member EBI ENST00000503201.1 ENSP00000427672.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503201.1Link to Ensembl Protein Viewer:ENSP00000427672.1Re-query CCDS DB by Nucleotide ID:ENST00000503201Re-query CCDS DB by Protein ID:ENSP00000427672
Original member Current member NCBI NM_000176.3 NP_000167.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000176.3Link to Protein Sequence:NP_000167.1Re-query CCDS DB by Nucleotide ID:NM_000176Re-query CCDS DB by Protein ID:NP_000167Link to BLAST:NP_000167.1
Original member Current member NCBI NM_001018074.1 NP_001018084.1 Accepted alive Link to Nucleotide Sequence:NM_001018074.1Link to Protein Sequence:NP_001018084.1Re-query CCDS DB by Nucleotide ID:NM_001018074Re-query CCDS DB by Protein ID:NP_001018084Link to BLAST:NP_001018084.1
Original member Current member NCBI NM_001018075.1 NP_001018085.1 Accepted alive Link to Nucleotide Sequence:NM_001018075.1Link to Protein Sequence:NP_001018085.1Re-query CCDS DB by Nucleotide ID:NM_001018075Re-query CCDS DB by Protein ID:NP_001018085Link to BLAST:NP_001018085.1
Original member Current member NCBI NM_001018076.2 NP_001018086.1 Accepted alive Link to Nucleotide Sequence:NM_001018076.2Link to Protein Sequence:NP_001018086.1Re-query CCDS DB by Nucleotide ID:NM_001018076Re-query CCDS DB by Protein ID:NP_001018086Link to BLAST:NP_001018086.1
Original member Current member NCBI NM_001018077.1 NP_001018087.1 Accepted alive Link to Nucleotide Sequence:NM_001018077.1Link to Protein Sequence:NP_001018087.1Re-query CCDS DB by Nucleotide ID:NM_001018077Re-query CCDS DB by Protein ID:NP_001018087Link to BLAST:NP_001018087.1
Original member Current member NCBI NM_001364180.2 NP_001351109.1 Accepted alive Link to Nucleotide Sequence:NM_001364180.2Link to Protein Sequence:NP_001351109.1Re-query CCDS DB by Nucleotide ID:NM_001364180Re-query CCDS DB by Protein ID:NP_001351109Link to BLAST:NP_001351109.1
Original member Current member NCBI NM_001364181.2 NP_001351110.1 Accepted alive Link to Nucleotide Sequence:NM_001364181.2Link to Protein Sequence:NP_001351110.1Re-query CCDS DB by Nucleotide ID:NM_001364181Re-query CCDS DB by Protein ID:NP_001351110Link to BLAST:NP_001351110.1
Original member Current member NCBI NM_001364182.1 NP_001351111.1 Accepted alive Link to Nucleotide Sequence:NM_001364182.1Link to Protein Sequence:NP_001351111.1Re-query CCDS DB by Nucleotide ID:NM_001364182Re-query CCDS DB by Protein ID:NP_001351111Link to BLAST:NP_001351111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000167.1 777 P04150-1 777 100% 0 0
NP_001018084.1 777 P04150-1 777 100% 0 0
NP_001018085.1 777 P04150-1 777 100% 0 0
NP_001018086.1 777 P04150-1 777 100% 0 0
NP_001018087.1 777 P04150-1 777 100% 0 0
NP_001351109.1 777 P04150-1 777 100% 0 0
NP_001351110.1 777 P04150-1 777 100% 0 0
NP_001351111.1 777 P04150-1 777 100% 0 0

Chromosomal Locations for CCDS 4278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143281889 143282041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143282568 143282725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143295460 143295590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143298668 143298812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143300485 143300763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143310097 143310213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143314002 143314168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143399656 143400839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGGACTCCAAAGAATCATTAACTCCTGGTAGAGAAGAAAACCCCAGCAGTGTGCTTGCTCAGGAGAGGG
GAGATGTGATGGACTTCTATAAAACCCTAAGAGGAGGAGCTACTGTGAAGGTTTCTGCGTCTTCACCCTC
ACTGGCTGTCGCTTCTCAATCAGACTCCAAGCAGCGAAGACTTTTGGTTGATTTTCCAAAAGGCTCAGTA
AGCAATGCGCAGCAGCCAGATCTGTCCAAAGCAGTTTCACTCTCAATGGGACTGTATATGGGAGAGACAG
AAACAAAAGTGATGGGAAATGACCTGGGATTCCCACAGCAGGGCCAAATCAGCCTTTCCTCGGGGGAAAC
AGACTTAAAGCTTTTGGAAGAAAGCATTGCAAACCTCAATAGGTCGACCAGTGTTCCAGAGAACCCCAAG
AGTTCAGCATCCACTGCTGTGTCTGCTGCCCCCACAGAGAAGGAGTTTCCAAAAACTCACTCTGATGTAT
CTTCAGAACAGCAACATTTGAAGGGCCAGACTGGCACCAACGGTGGCAATGTGAAATTGTATACCACAGA
CCAAAGCACCTTTGACATTTTGCAGGATTTGGAGTTTTCTTCTGGGTCCCCAGGTAAAGAGACGAATGAG
AGTCCTTGGAGATCAGACCTGTTGATAGATGAAAACTGTTTGCTTTCTCCTCTGGCGGGAGAAGACGATT
CATTCCTTTTGGAAGGAAACTCGAATGAGGACTGCAAGCCTCTCATTTTACCGGACACTAAACCCAAAAT
TAAGGATAATGGAGATCTGGTTTTGTCAAGCCCCAGTAATGTAACACTGCCCCAAGTGAAAACAGAAAAA
GAAGATTTCATCGAACTCTGCACCCCTGGGGTAATTAAGCAAGAGAAACTGGGCACAGTTTACTGTCAGG
CAAGCTTTCCTGGAGCAAATATAATTGGTAATAAAATGTCTGCCATTTCTGTTCATGGTGTGAGTACCTC
TGGAGGACAGATGTACCACTATGACATGAATACAGCATCCCTTTCTCAACAGCAGGATCAGAAGCCTATT
TTTAATGTCATTCCACCAATTCCCGTTGGTTCCGAAAATTGGAATAGGTGCCAAGGATCTGGAGATGACA
ACTTGACTTCTCTGGGGACTCTGAACTTCCCTGGTCGAACAGTTTTTTCTAATGGCTATTCAAGCCCCAG
CATGAGACCAGATGTAAGCTCTCCTCCATCCAGCTCCTCAACAGCAACAACAGGACCACCTCCCAAACTC
TGCCTGGTGTGCTCTGATGAAGCTTCAGGATGTCATTATGGAGTCTTAACTTGTGGAAGCTGTAAAGTTT
TCTTCAAAAGAGCAGTGGAAGGACAGCACAATTACCTATGTGCTGGAAGGAATGATTGCATCATCGATAA
AATTCGAAGAAAAAACTGCCCAGCATGCCGCTATCGAAAATGTCTTCAGGCTGGAATGAACCTGGAAGCT
CGAAAAACAAAGAAAAAAATAAAAGGAATTCAGCAGGCCACTACAGGAGTCTCACAAGAAACCTCTGAAA
ATCCTGGTAACAAAACAATAGTTCCTGCAACGTTACCACAACTCACCCCTACCCTGGTGTCACTGTTGGA
GGTTATTGAACCTGAAGTGTTATATGCAGGATATGATAGCTCTGTTCCAGACTCAACTTGGAGGATCATG
ACTACGCTCAACATGTTAGGAGGGCGGCAAGTGATTGCAGCAGTGAAATGGGCAAAGGCAATACCAGGTT
TCAGGAACTTACACCTGGATGACCAAATGACCCTACTGCAGTACTCCTGGATGTTTCTTATGGCATTTGC
TCTGGGGTGGAGATCATATAGACAATCAAGTGCAAACCTGCTGTGTTTTGCTCCTGATCTGATTATTAAT
GAGCAGAGAATGACTCTACCCTGCATGTACGACCAATGTAAACACATGCTGTATGTTTCCTCTGAGTTAC
ACAGGCTTCAGGTATCTTATGAAGAGTATCTCTGTATGAAAACCTTACTGCTTCTCTCTTCAGTTCCTAA
GGACGGTCTGAAGAGCCAAGAGCTATTTGATGAAATTAGAATGACCTACATCAAAGAGCTAGGAAAAGCC
ATTGTCAAGAGGGAAGGAAACTCCAGCCAGAACTGGCAGCGGTTTTATCAACTGACAAAACTCTTGGATT
CTATGCATGAAGTGGTTGAAAATCTCCTTAACTATTGCTTCCAAACATTTTTGGATAAGACCATGAGTAT
TGAATTCCCCGAGATGTTAGCTGAAATCATCACCAATCAGATACCAAAATATTCAAATGGAAATATCAAA
AAACTTCTGTTTCATCAAAAGTGA

Translation (777 aa):
MDSKESLTPGREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQRRLLVDFPKGSV
SNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDLKLLEESIANLNRSTSVPENPK
SSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNE
SPWRSDLLIDENCLLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEK
EDFIELCTPGVIKQEKLGTVYCQASFPGANIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPI
FNVIPPIPVGSENWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSSPPSSSSTATTGPPPKL
CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA
RKTKKKIKGIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSTWRIM
TTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSANLLCFAPDLIIN
EQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKA
IVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQIPKYSNGNIK
KLLFHQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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