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Report for CCDS25303.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
25303.1 |
Public |
Mus musculus |
11 |
Cbx1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:12412](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:25303.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:12412](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 25303.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000093943.9 |
ENSMUSP00000091475.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000093943.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000091475.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000093943](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000091475](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362560.1 |
NP_001349489.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362560.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349489.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349489](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349489.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362561.1 |
NP_001349490.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362561.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349490.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362561](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349490](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349490.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362563.1 |
NP_001349492.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362563.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349492.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362563](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349492](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349492.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007622.4 |
NP_031648.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007622.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031648.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007622](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031648](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031648.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 25303.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (558 nt): ATGGGGAAAAAGCAAAACAAGAAGAAAGTGGAGGAGGTACTAGAAGAAGAGGAAGAGGAATATGTGGTGG AAAAAGTTCTTGATCGGCGAGTTGTCAAGGGCAAGGTGGAATATCTTCTAAAGTGGAAGGGTTTCTCAGA TGAGGACAACACTTGGGAGCCAGAAGAGAATCTGGATTGCCCTGACCTTATTGCTGAGTTTCTACAGTCA CAGAAAACAGCTCATGAGACAGATAAGTCAGAGGGAGGCAAGCGCAAAGCTGATTCTGATTCTGAAGATA AAGGAGAGGAAAGCAAACCAAAGAAGAAGAAAGAAGAGTCAGAAAAGCCACGAGGCTTTGCCCGGGGTTT GGAGCCAGAGCGGATTATTGGAGCTACTGACTCCAGTGGAGAGCTCATGTTCCTGATGAAATGGAAAAAC TCTGATGAGGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTCATATCCTTCT ATGAGGAAAGGCTAACGTGGCATTCCTACCCCTCAGAGGATGATGACAAAAAAGACGACAAGAATTAG
Translation (185 aa): MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN
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