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Report for CCDS87543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87543.1 Public Homo sapiens 7 SMIM30 24 110 108 CCDS HistoryNCBI Gene:401397Re-query CCDS DB by CCDS ID:87543.1Re-query CCDS DB by GeneID:401397See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87543.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441359.1 ENSP00000490064.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441359.1Link to Ensembl Protein Viewer:ENSP00000490064.1Re-query CCDS DB by Nucleotide ID:ENST00000441359Re-query CCDS DB by Protein ID:ENSP00000490064
Original member Current member EBI ENST00000397764.8 ENSP00000490095.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397764.8Link to Ensembl Protein Viewer:ENSP00000490095.1Re-query CCDS DB by Nucleotide ID:ENST00000397764Re-query CCDS DB by Protein ID:ENSP00000490095
Original member Current member NCBI NM_001352687.2 NP_001339616.1 Accepted alive Link to Nucleotide Sequence:NM_001352687.2Link to Protein Sequence:NP_001339616.1Re-query CCDS DB by Nucleotide ID:NM_001352687Re-query CCDS DB by Protein ID:NP_001339616Link to BLAST:NP_001339616.1
Original member Current member NCBI NM_001352688.2 NP_001339617.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001352688.2Link to Protein Sequence:NP_001339617.1Re-query CCDS DB by Nucleotide ID:NM_001352688Re-query CCDS DB by Protein ID:NP_001339617Link to BLAST:NP_001339617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339616.1 59 A4D0T7 59 100% 0 0
NP_001339617.1 59 A4D0T7 59 100% 0 0

Chromosomal Locations for CCDS 87543.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 113117399 113117578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (180 nt):
ATGACCTCAGTTTCAACACAGTTGTCCTTAGTCCTCATGTCACTGCTTTTGGTGCTGCCTGTTGTGGAAG
CAGTAGAAGCCGGTGATGCAATCGCCCTTTTGTTAGGTGTGGTTCTCAGCATTACAGGCATTTGTGCCTG
CTTGGGGGTATATGCACGAAAAAGAAATGGACAGATGTGA

Translation (59 aa):
MTSVSTQLSLVLMSLLLVLPVVEAVEAGDAIALLLGVVLSITGICACLGVYARKRNGQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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