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Report for CCDS85037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85037.1 Public Mus musculus 6 Krba1 23 108 98 CCDS HistoryNCBI Gene:77827Re-query CCDS DB by CCDS ID:85037.1Re-query CCDS DB by GeneID:77827See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114572.8 ENSMUSP00000110219.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114572.8Link to Ensembl Protein Viewer:ENSMUSP00000110219.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000114572Re-query CCDS DB by Protein ID:ENSMUSP00000110219
Original member Current member NCBI NM_001347152.1 NP_001334081.1 Accepted alive Link to Nucleotide Sequence:NM_001347152.1Link to Protein Sequence:NP_001334081.1Re-query CCDS DB by Nucleotide ID:NM_001347152Re-query CCDS DB by Protein ID:NP_001334081Link to BLAST:NP_001334081.1

Chromosomal Locations for CCDS 85037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48395876 48395887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48402884 48403010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403378 48403497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403991 48404140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48405234 48405389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406297 48406431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406834 48407007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48407673 48407822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48408529 48408726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409170 48409343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409718 48409894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48411642 48411794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48412274 48412426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413078 48413272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413363 48413503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414056 48414151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414490 48414600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48415576 48416390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3237 nt):
ATGGCGCTCCAGGTGCCCATCAGCTTCAAGGACTTGGCTGTGCGGTTCTCTGAAGAGGAATGGCGGCTCC
TGCAGGAGGGGCAGCGGGAATTCTACAGAGACGTGATGCGGGAAAACTACGAGACGTTGGTGTCTGTGGG
GACCTCTGAGCTGCTTCCTCTCTCTGCTTTCCTGTCACCTGCAGAGGCTGGAGGAGCCACATCAGGAGAG
AGCCACCAGGATAAGGGACAAAAACCCCATTTGGAGCATAGTTCCCAGGGAGAGCAGCCTCAGCAGAGCC
TACACCTCACCGCATTAGTGCAGCTGGTGAAGGAGATTCCAGAGTTCTTGTTTGGAGAAGTGAAGGGTAC
TGAGGACTACTCCGAGAGTGGGAGCACCAGTCTGGATGGGGAGCAAACAAGCCCCGAGGTAGCTGTGGTT
GTGGAAGCTTGCCCTCCCCGAGGCCTGCTCAATTCTCTTCCGGAGAGCCCTGCAAGCCACCCCAGCCTGG
CCACCACACCCACAGGCAGCTCAACTTCCGGTGGCCCTCCTGGAGACTGGGCACACGGAAGCCCCTTACC
TGCTATAGGAACTGATGATAAGCCATTATCTATAGAGAAGGAAGGTGTAGGAGCCTCGAGAGAGACCTCC
ATTCATTCCACTCAAAGCCTGGGCCAGAGCAAGAGTTACCTAAGACAGGAGCGAGGCAGCATGGGAACAG
GAACCCTTCCTGAGAACAGCCCATTGCAAGGCCTCATCAACTGTTTGAAGGAGATCCTTGTGCCCAGACC
CCAGCACCGGGGGACAGCCCCAGACTTGCCGCCTTCTCTCCCTGGCTTGAGTGTGTTGAAGCAGACGAGA
GCTGAGGTAGAGGCTGGGAGCCTGCCCTGCCCGGTGAAGACAGAGGCAGCATCCGGAGATTGTCCCCTTC
AGGGCCTGCTGAACTGTCTGAAGGAGATCCCAAAAGCTCCAGACCGACGTCCCAGCCCCTCAGGAGCATC
AGACTTGCAGCTGCAGGAGGACCCAGGGAAAAGACATTCTGGAGGGATGAGACACCTCCAGACTCCTCCC
CACCCTAGTCATGAAGCTGGCAGTATGCTTGCCACGGTGAAGGTAGAAGATGGCTGGGCCCAGAGTCCCC
CAGTGCCAGCATCCTGCCAGCTTAGCAGGCAAGGCTATAGCTCCTATTCCACTGGAGACAACAGAGAGGT
CCGTGTGCCCCGCTGGGGCCCCATGACTCTAGCCAGCAGGGCCTCAAGCTCACCCCTAGAAGCTCTGGAG
GCCTGTCTGAAGGGCATCCCTCCAGGTGGGTCATCACCTCTTCAGTCACTAGCCATCTCATGGTCCAGAA
GTCCTCAGCTAGGAGATGCCGGGTCTCAGAGGTTTGAGCTACAGCAACAAGGATCTCACAGTGAAGAAGC
TACAAGGGAGCCACTTCTGCCTCTGAGCTTGCAGGGCTACATGAGAGAAGGACCTGGGGTTCAACCCTGT
GGCTCCCAGGGTACCCCTACCAGCTTCTCCTCAGCCAGCAGCAGTGATGGGGATCTGGATTTCAGGAGCC
CCAGGAGCAGCCAGGGGCAACGGCTTGGGAAAGGCTATCTACCAGGAAACTCTCCACTCCAAGGCCTGGA
GAACTGCCTGAGAGAGATCCCTATTCCCAGGCCACAGGCTGCCTGGCCATGCTCCTCGGCTGTCAACAGG
GGATTGAAGAGAACAGAGCCCAGGAACTGGACTGGAGACAGAGAAGGACTGAGAGGTGAGGCCTCTGAGC
CACCCCACCTCAGACAGCGTCCTGGAGAAGTGCCCAGCAGGAGTCTGCATCAAGACAGTCCACAGACCTG
TACTTCCACCTGCCACCAAGTGACCACCAGGCCAGGAACATGGCAATGGCCACAAGAGGAGACAGCCACC
ATGCCCTCCCCTCTGCACCGCCTGGAGAACTCTCTGAGGGGGATCTTGCCTGTGAGGCCCTTGCGTTTCA
CCTGCGTGACTGGCCCTGGCCCCAGTCCCAGCCCTTGCTCCAGCTCCAGCTTCAGCAGCTCTGATGGAGA
AGACCTAAGACCAGAGCCTGCATTTTGGCAGTCACCCCTCCAGCAGAAAGACCAGCCTCCCTCCTGTAAG
GACCCTGTTCGTCTGTGCCCTGTCTCTGGCGCATCTCCAAGAGTCAACAGCAATAGCTGTTCTGCGGAAG
ACCGTGAGAGAACAGAGCCCAGGGACTGCAGCAGCCTCAGCGCAGGAAGAGCAGAAGAGAAGCCCCACCC
ACCCAGAAGAGAAGATGGTGCAGAGCGCACACGCCAGCCTGGGCCTGTCACCAATGCTGAAGGAAAAGGA
GCAGCAGCTGGCCACCCATCGCCTGCCCCTCAGCTGGAGGAAAAGCCTGAGCCCAAGGGTACTGAAGACT
CCAGGGACCTGGAGCCTGGACATAGACCACCCAGTGCCGCAGCCAGGACCCAAGGGAAGCTGCTCTCTGG
AGACCCTCCGGAGTCACCTAGCAAGTCTCCCCTTCCCACAACTGTCTTGTCAAAATGGTCACCCACTTCT
CTTCAGCCACCATGCCCCTGTGGCAGGTCCTTGCAGCAGGAGCTGCATAACCTTGGTACTGCCCTCACGG
ACAAGCTAGACCGGCTTGCAGCAGCCTTGGCAGGCCTGACTCAGGAAGTTGCAACCATGAAGACCCAAAT
GGATCAACTGCGAAGGCACCCACGGAGCCTTGGCCCAAAAGGTCAGGGTTCCTGGCAGTTGGCCCTCCCC
CAGAGACCTCGCTGGGTCAACAGACTGGGCCACAGACATCTACCCTACTGGAGACAGAAGGGCCCCACCA
GGCCCAGACCAAAGATTCTGCGGACCCAGGCAGAAGGCTGCAAGACTAGTGACCGCCCAGGACTCTCTAG
AGGGAAGGGCAGTTTGGTGCCTCAGCTGCCTCCAGAGGCTTCCTTGGTAGAATCTTCCAGGCCCACCTGT
AGTTCATCCCAGCAGATCTCCTCTACGCCTGGAGGCCACACTGTGCTGACTGCACACCCTCCTCTGGAGC
ACACTGCATGCCACCAGAATCCCCTCTCCCCTTCAGTGCCTACTTCAGTGCAGGTCCCCCTTGTGGCCTC
ACCTGCAACCAGTGCAGACACAGAACCTCCGGCTGCTAGAGTGGCAGCCATCAGCATTCCAAACCAGCCC
AAGGAACCTGACAGCCTGCTAGGGGAAGCCCTCAGCAGAGACCTCTGGGGAGGTGACCACCGGGACCCAA
GGTGGGGGGCCCATTAA

Translation (1078 aa):
MALQVPISFKDLAVRFSEEEWRLLQEGQREFYRDVMRENYETLVSVGTSELLPLSAFLSPAEAGGATSGE
SHQDKGQKPHLEHSSQGEQPQQSLHLTALVQLVKEIPEFLFGEVKGTEDYSESGSTSLDGEQTSPEVAVV
VEACPPRGLLNSLPESPASHPSLATTPTGSSTSGGPPGDWAHGSPLPAIGTDDKPLSIEKEGVGASRETS
IHSTQSLGQSKSYLRQERGSMGTGTLPENSPLQGLINCLKEILVPRPQHRGTAPDLPPSLPGLSVLKQTR
AEVEAGSLPCPVKTEAASGDCPLQGLLNCLKEIPKAPDRRPSPSGASDLQLQEDPGKRHSGGMRHLQTPP
HPSHEAGSMLATVKVEDGWAQSPPVPASCQLSRQGYSSYSTGDNREVRVPRWGPMTLASRASSSPLEALE
ACLKGIPPGGSSPLQSLAISWSRSPQLGDAGSQRFELQQQGSHSEEATREPLLPLSLQGYMREGPGVQPC
GSQGTPTSFSSASSSDGDLDFRSPRSSQGQRLGKGYLPGNSPLQGLENCLREIPIPRPQAAWPCSSAVNR
GLKRTEPRNWTGDREGLRGEASEPPHLRQRPGEVPSRSLHQDSPQTCTSTCHQVTTRPGTWQWPQEETAT
MPSPLHRLENSLRGILPVRPLRFTCVTGPGPSPSPCSSSSFSSSDGEDLRPEPAFWQSPLQQKDQPPSCK
DPVRLCPVSGASPRVNSNSCSAEDRERTEPRDCSSLSAGRAEEKPHPPRREDGAERTRQPGPVTNAEGKG
AAAGHPSPAPQLEEKPEPKGTEDSRDLEPGHRPPSAAARTQGKLLSGDPPESPSKSPLPTTVLSKWSPTS
LQPPCPCGRSLQQELHNLGTALTDKLDRLAAALAGLTQEVATMKTQMDQLRRHPRSLGPKGQGSWQLALP
QRPRWVNRLGHRHLPYWRQKGPTRPRPKILRTQAEGCKTSDRPGLSRGKGSLVPQLPPEASLVESSRPTC
SSSQQISSTPGGHTVLTAHPPLEHTACHQNPLSPSVPTSVQVPLVASPATSADTEPPAARVAAISIPNQP
KEPDSLLGEALSRDLWGGDHRDPRWGAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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