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Report for CCDS23476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23476.1 Public Mus musculus 9 Rpl29 23 108 98 CCDS HistoryNCBI Gene:19944Re-query CCDS DB by CCDS ID:23476.1Re-query CCDS DB by GeneID:19944See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059802.6 ENSMUSP00000080203.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059802.6Link to Ensembl Protein Viewer:ENSMUSP00000080203.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059802Re-query CCDS DB by Protein ID:ENSMUSP00000080203
Original member Current member EBI ENSMUST00000098994.6 ENSMUSP00000096592.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098994.6Link to Ensembl Protein Viewer:ENSMUSP00000096592.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000098994Re-query CCDS DB by Protein ID:ENSMUSP00000096592
Original member Current member EBI ENSMUST00000150576.7 ENSMUSP00000117834.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150576.7Link to Ensembl Protein Viewer:ENSMUSP00000117834.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150576Re-query CCDS DB by Protein ID:ENSMUSP00000117834
Original member NCBI NM_001324533.1 NP_001311462.1 Updated not alive Link to Nucleotide Sequence:NM_001324533.1Link to Protein Sequence:NP_001311462.1Re-query CCDS DB by Nucleotide ID:NM_001324533Re-query CCDS DB by Protein ID:NP_001311462
Current member NCBI NM_001324533.2 NP_001311462.1 Accepted alive Link to Nucleotide Sequence:NM_001324533.2Link to Protein Sequence:NP_001311462.1Re-query CCDS DB by Nucleotide ID:NM_001324533Re-query CCDS DB by Protein ID:NP_001311462Link to BLAST:NP_001311462.1
Original member NCBI NM_001324534.1 NP_001311463.1 Updated not alive Link to Nucleotide Sequence:NM_001324534.1Link to Protein Sequence:NP_001311463.1Re-query CCDS DB by Nucleotide ID:NM_001324534Re-query CCDS DB by Protein ID:NP_001311463
Current member NCBI NM_001324534.2 NP_001311463.1 Accepted alive Link to Nucleotide Sequence:NM_001324534.2Link to Protein Sequence:NP_001311463.1Re-query CCDS DB by Nucleotide ID:NM_001324534Re-query CCDS DB by Protein ID:NP_001311463Link to BLAST:NP_001311463.1
Original member NCBI NM_009082.3 NP_033108.1 Updated not alive Link to Nucleotide Sequence:NM_009082.3Link to Protein Sequence:NP_033108.1Re-query CCDS DB by Nucleotide ID:NM_009082Re-query CCDS DB by Protein ID:NP_033108
Current member NCBI NM_009082.4 NP_033108.1 Accepted alive Link to Nucleotide Sequence:NM_009082.4Link to Protein Sequence:NP_033108.1Re-query CCDS DB by Nucleotide ID:NM_009082Re-query CCDS DB by Protein ID:NP_033108Link to BLAST:NP_033108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311462.1 160 P47915 160 100% 0 0
NP_001311463.1 160 P47915 160 100% 0 0
NP_033108.1 160 P47915 160 100% 0 0

Chromosomal Locations for CCDS 23476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106429978 106430014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106430308 106430372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106431069 106431449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCGCAAATGGCACAGAAATGGCATCAAGAAAC
CCCGGTCGCAAAGATACGAATCTCTTAAGGGGGTTGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAA
GAAGCACAACAAGAAAGGCCTGAAGAAGATGCAGGCCAACAATGCAAAGGCAGTGAGTGCGCGCGCAGAG
GCCATCAAGGCCCTGGTGAAGCCTCAGGCCATCAAGCCCAAGATGCCAAAAGGCCCCAAACTCAAGCGGC
TGGCTTTCATCGCTCACCCCAAGCTTGGGAAGCGGATTCGAAGCTACATGGCCAAGGGTCAGAGGCTCTG
CCAACCGAAGCCTAAGGTCCAAACCAAGGCAGGGGCCAAAGCTCCAGCTAAGGCCCAGGCTTCAGCTCCA
GCTCAGGCTCCCAAAGGTGCTCAGGCCCCCAAAGGTGCCCAGGCCCCTGTGAAGGCCCCATAG

Translation (160 aa):
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAVSARAE
AIKALVKPQAIKPKMPKGPKLKRLAFIAHPKLGKRIRSYMAKGQRLCQPKPKVQTKAGAKAPAKAQASAP
AQAPKGAQAPKGAQAPVKAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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