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Report for CCDS78088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78088.1 Public Homo sapiens 5 SIMC1 24 110 108 CCDS HistoryNCBI Gene:375484Re-query CCDS DB by CCDS ID:78088.1Re-query CCDS DB by GeneID:375484See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429602.7 ENSP00000410552.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429602.7Link to Ensembl Protein Viewer:ENSP00000410552.3Re-query CCDS DB by Nucleotide ID:ENST00000429602Re-query CCDS DB by Protein ID:ENSP00000410552
Original member Current member NCBI NM_001308195.2 NP_001295124.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308195.2Link to Protein Sequence:NP_001295124.1Re-query CCDS DB by Nucleotide ID:NM_001308195Re-query CCDS DB by Protein ID:NP_001295124Link to BLAST:NP_001295124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295124.1 891 Q8NDZ2-5 891 100% 0 0

Chromosomal Locations for CCDS 78088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176238509 176238637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176289654 176290955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176295030 176295262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176296251 176296320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176313691 176313845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176322273 176322425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176324629 176324757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176336720 176336876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176337062 176337146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176345183 176345445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGT
CGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTGGACTTCATTGA
CTTAACTAGAGAGACCAGACCAAGGACAAAAGATCGCAGTGGACTGTATGTGATTGACCTGACAAGAGCT
GAGGGAGAAAATAGACCTATTGCCACTCTTGACTTAACTTTAGAACCTGTCACTCCTTCCCAGAAGGAGC
CAACCAGTCTTCAGACATGTGCCAGCCTCTCTGGCAAAGCGGTGATGGAAGGGCACGTGGACAGAAGCTC
TCAGCCTACAGCACGGAGAATCATTAACAGTGATCCTGTAGATTTGGACCTAGTGGAAGAAAACACCTTT
GTAGGTCCCCCACCCGCTACATCCATCAGTGGAGGCTCTGTTTATCCAACAGAGCCTAATTGTAGCTCAG
CCACATTCACAGGTAACCTCAGCTTCTTGGCAAGTCTACAGCTGTCTTCAGATGTTAGCTCCCTCTCCCC
AACAAGCAATAATAGTAGGAGCAGCAGCAGCAGCAGCAATCAAAAAGCACCCTTGCCATGCCCACAGCAA
GATGTATCTCGCCCACCACAGGCCTTGCCGTGCCCCCTGCGACCTTTGCCATGCCCACCGAGAGCCTCAC
CATGTCCACCACGAGCCTCCTCATGCCCACCACGAGCCTTGTCATGCCCATCACAAACCATGCAGTGCCA
ACTACCAGCTCTAACTCACCCACCTCAAGAAGTGCCATGCCCTCGGCAGAATATCCCAGGCCCACCTCAA
GACTCTCTGGGCCTACCTCAAGATGTGCCAGGGCTGCCTCAAAGCATATTACATCCACAAGATGTGGCAT
ACCTGCAAGACATGCCACGGTCACCAGGAGATGTGCCACAGTCACCAAGTGATGTTTCACCGTCACCAGA
TGCACCACAGTCACCAGGGGGCATGCCACACTTACCGGGAGATGTGTTACATTCACCTGGAGACATGCCA
CACTCATCAGGGGACGTGACACACTCACCTAGAGACATCCCTCACTTACCAGGAGACAGGCCTGACTTTA
CCCAGAATGATGTACAGAACCGTGACATGCCTATGGATATCTCAGCTCTGTCCTCTCCAAGCTGCTCTCC
CAGCCCACAGTCTGAAACTCCCTTAGAGAAAGTTCCTTGGCTCTCTGTCATGGAAACCCCAGCCAGAAAA
GAAATATCACTGTCAGAGCCTGCCAAACCTGGGTCTGCCCACGTACAATCACGAACACCACAAGGTGGGT
TGTACAACAGACCATGCCTGCATAGACTGAAGTACTTCTTACGTCCTCCGGTTCATCACCTCTTCTTTCA
GACGCTAATACCGGATAAAGACACAAGAGAGAACAAGGGTCAAAAATTAGAACCCATCCCTCATCGAAGA
CTAAGAATGGTAACAAATACCATTGAAGAGAATTTTCCTCTGGGGACTGTGCAGTTTTTGATGGACTTTG
TGTCACCCCAGCATTACCCACCAAGAGAAATCGTGGCTCACATCATCCAGAAAATCTTGCTCAGTGGCTC
TGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACAGCTACATCCAGCCAAT
GCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAGGGACAAACTCTGCCTG
GGCGAGTCCTTTTCCTGCGTTATGTCGTTCAGACCCTAGAAGATGACTTTCAGCAGACCCTGAGGAGGCA
ACGGCAGCACCTGCAGCAATCCATTGCAAACATGGTGCTTTCCTGTGACAAGCAGCCCCACAATGTCAGG
GATGTTATCAAGTGGCTGGTCAAAGCAGTAACTGAAGATGGATTGACTCAGCCCCCAAATGGAAATCAAA
CGTCTTCAGGAACAGGAATCTTGAAAGCCAGCAGTAGCCACCCTTCTTCCCAGCCCAACCTGACAAAGAA
CACCAATCAGCTGATTGTGTGCCAGCTTCAGAGGATGCTCTCCATAGCCGTAGAGGTGGACAGGACCCCC
ACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGAGCCAGA
GAGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCTGCAAAGTGTTAGAAATCATATTCCTCCA
CAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCAGGCCCTCTACTTTCTGAATAATTCTACG
TCACTGCTCAAGTGTCAGTCAGATAAAAGCCAGTGGCAGACTTGGGACGAATTGGTTGAGCATCTGCAGT
TTCTGCTGTCCAGTTATCAACATGTTTTAAGAGAACACTTAAGGAGTTCCGTGATCGACCGAAAGGACTT
AATAATCAAAAGGATTAAGCCCAAACCCCAGCAAGGAGATGACATCACAGTGGTAGACGTAGAGAAGCAG
ATTGAGGCCTTCCGCAGCCGCCTGATCCAGATGCTGGGGGAGCCTCTTGTCCCCCAACTCCAAGACAAAG
TGCACTTGTTGAAGCTCCTGCTCTTCTATGCTGCGGACTTGAACCCTGATGCAGAGCCCTTTCAAAAGGG
CTGGAGCGGCTCCTGA

Translation (891 aa):
MEDFIVISDDSGSESSGGARPGRSRRPRRALSRTSGALPRRTVDFIDLTRETRPRTKDRSGLYVIDLTRA
EGENRPIATLDLTLEPVTPSQKEPTSLQTCASLSGKAVMEGHVDRSSQPTARRIINSDPVDLDLVEENTF
VGPPPATSISGGSVYPTEPNCSSATFTGNLSFLASLQLSSDVSSLSPTSNNSRSSSSSSNQKAPLPCPQQ
DVSRPPQALPCPLRPLPCPPRASPCPPRASSCPPRALSCPSQTMQCQLPALTHPPQEVPCPRQNIPGPPQ
DSLGLPQDVPGLPQSILHPQDVAYLQDMPRSPGDVPQSPSDVSPSPDAPQSPGGMPHLPGDVLHSPGDMP
HSSGDVTHSPRDIPHLPGDRPDFTQNDVQNRDMPMDISALSSPSCSPSPQSETPLEKVPWLSVMETPARK
EISLSEPAKPGSAHVQSRTPQGGLYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRENKGQKLEPIPHRR
LRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPAN
AKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQTLRRQRQHLQQSIANMVLSCDKQPHNVR
DVIKWLVKAVTEDGLTQPPNGNQTSSGTGILKASSSHPSSQPNLTKNTNQLIVCQLQRMLSIAVEVDRTP
TCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNST
SLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQ
IEAFRSRLIQMLGEPLVPQLQDKVHLLKLLLFYAADLNPDAEPFQKGWSGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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