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Report for CCDS19641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19641.1 Public Mus musculus 5 Sh2b3 23 108 98 CCDS HistoryNCBI Gene:16923Re-query CCDS DB by CCDS ID:19641.1Re-query CCDS DB by GeneID:16923See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040308.13 ENSMUSP00000041611.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040308.13Link to Ensembl Protein Viewer:ENSMUSP00000041611.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040308Re-query CCDS DB by Protein ID:ENSMUSP00000041611
Original member Current member EBI ENSMUST00000086310.7 ENSMUSP00000083490.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086310.7Link to Ensembl Protein Viewer:ENSMUSP00000083490.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086310Re-query CCDS DB by Protein ID:ENSMUSP00000083490
Original member Current member EBI ENSMUST00000122426.7 ENSMUSP00000113926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122426.7Link to Ensembl Protein Viewer:ENSMUSP00000113926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122426Re-query CCDS DB by Protein ID:ENSMUSP00000113926
Original member NCBI NM_001306126.1 NP_001293055.1 Updated not alive Link to Nucleotide Sequence:NM_001306126.1Link to Protein Sequence:NP_001293055.1Re-query CCDS DB by Nucleotide ID:NM_001306126Re-query CCDS DB by Protein ID:NP_001293055
Current member NCBI NM_001306126.2 NP_001293055.1 Accepted alive Link to Nucleotide Sequence:NM_001306126.2Link to Protein Sequence:NP_001293055.1Re-query CCDS DB by Nucleotide ID:NM_001306126Re-query CCDS DB by Protein ID:NP_001293055Link to BLAST:NP_001293055.1
Original member NCBI NM_001306127.1 NP_001293056.1 Updated not alive Link to Nucleotide Sequence:NM_001306127.1Link to Protein Sequence:NP_001293056.1Re-query CCDS DB by Nucleotide ID:NM_001306127Re-query CCDS DB by Protein ID:NP_001293056
Current member NCBI NM_001306127.2 NP_001293056.1 Accepted alive Link to Nucleotide Sequence:NM_001306127.2Link to Protein Sequence:NP_001293056.1Re-query CCDS DB by Nucleotide ID:NM_001306127Re-query CCDS DB by Protein ID:NP_001293056Link to BLAST:NP_001293056.1
Original member NCBI NM_008507.4 NP_032533.1 Updated not alive Link to Nucleotide Sequence:NM_008507.4Link to Protein Sequence:NP_032533.1Re-query CCDS DB by Nucleotide ID:NM_008507Re-query CCDS DB by Protein ID:NP_032533
Current member NCBI NM_008507.5 NP_032533.1 Accepted alive Link to Nucleotide Sequence:NM_008507.5Link to Protein Sequence:NP_032533.1Re-query CCDS DB by Nucleotide ID:NM_008507Re-query CCDS DB by Protein ID:NP_032533Link to BLAST:NP_032533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293055.1 548 O09039 548 100% 0 0
NP_001293056.1 548 O09039 548 100% 0 0
NP_032533.1 548 O09039 548 100% 0 0

Chromosomal Locations for CCDS 19641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121817771 121818093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818216 121818387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818465 121818679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818760 121818854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818939 121819030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121819107 121819208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121828402 121829049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGAACGAGCCCACCGTGCAGCCGTCCCGCACATCCTCCGCACCCGCCTCGCCGGCATCCCCACGCGGCT
GGAGCGACTTCTGCGAGCAGCACGCAGCAGCGGCGGCCCGGGAGCTGGCCCGCCAGTACTGGTTGTTTGC
GCGCGCGCACCCACAGCCGCCGCGCGCGGACCTGGTGTCGCTGCAGTTCGCGGAGCTCTTCCAGCGCCAC
TTCTGCCGGGAGGTGCGCGAGAGCCTCGCAGGACCGCCGGGTCACGACTACCGCGCCACTGCTCCGCCCC
GCCCCGCGCTGCCCAAGGCACGCAGCTCCGAGGACCTGGGCCCGCGGCCCGCCTGTGCCCTGCAGCACCT
GCGCCGCGGCCTGCGCCAGCTCTTCCGCCGCCGCTCGGCAGGGGAGCTGCCCGGGGCTACCAGTGACACC
AATGACATCGACACCACCGCAGCCAGCAGGCCGGGCCCGGCCCGCAAGTTGCTACCCTGGGGCCTGCGAG
AGCCGCCCACTGAGGCGCTCAAGGAGGTCGTATTGCGCTATAGCCTGGCGGACGAGGCAGCAATGGACAG
CGGCGCACGCTGGCAGCGGGGTCGCCTGGTGCTTCGGTCTCCAGGTCCGGGCCACAGCCACTTTCTGCAG
CTCTTCGATCCGCCCAAGAGCTCAAAGCCCAAGCTCCAAGAGGCCTGTTCCAGCATCCGGGAGGTCCGAC
CATGTACACGCCTGGAGATGCCTGACAACCTCTACACCTTTGTGTTGAAGGTGCAGGACCAGACAGACAT
CATCTTTGAGGTGGGAGATGAACAGCAGCTGAACTCATGGCTGGCAGAGCTCAGGGCAAGCACAGGCCTT
GGGCTGGAGCACCCGGACACCGAGTTACCTCTTTCCTTAGCGGCAGAGCCTGGCCCAGCTAGATCCCCAA
GGGGAAGCACTGACTCCCTGGACCAAGGTGCTTCACCTGGGGTGTTGCTGGACCCAGCCTGCCAGAAAAC
AGATCACTTCCTATCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGGGTGAGGGCTGCACAGCTGGTC
CAGCTCCAGGGCCCTGATGCCCACGGCGTGTTCCTGGTGCGGCAGAGTGAGTCCCGGAGAGGAGAGTATG
TACTCACATTCAACTTACAGGGCAGAGCCAAGCACTTACGCCTGGTGCTCACAGAGCGTGGACAGTGCCG
GGTGCAACACCTGCACTTCCCCTCGGTGGTAGATATGCTCCGCCACTTCCAGCGTTCTCCTATCCCACTG
GAATGTGGAGCAGCTTGTGACGTCCGACTCTCTGGCTATGTGGTAGTCCTCTCTCAGGCACCAGGTTCCT
CCAACACCGTCCTCTTCCCTTTTTCCCTTCCTCACTGGGATTCGGAGCTGGGTCATCCCCACCTCAGCTC
TGTTGGCTGTCCCCCCAGCCATGGTGCAGAGGCTCTCCCTGGCCAAGTGACACCACCTGAGCAGATCTTC
CACCTGGTGCCTTCTCCTGAGGAACTGGCCAACAGTCTGCGGCAGCTGGAGCTCGAGTCTGTGAGCAGTG
CCCGGGACTCGGACTATGACATGGACTCCTCTTCACGGGGCCACCTTCGGGCCATTGACAACCAGTACAC
CCCTCTCTCACAGCTGTGCAGAGAGGCAGACGTGTGA

Translation (548 aa):
MNEPTVQPSRTSSAPASPASPRGWSDFCEQHAAAAARELARQYWLFARAHPQPPRADLVSLQFAELFQRH
FCREVRESLAGPPGHDYRATAPPRPALPKARSSEDLGPRPACALQHLRRGLRQLFRRRSAGELPGATSDT
NDIDTTAASRPGPARKLLPWGLREPPTEALKEVVLRYSLADEAAMDSGARWQRGRLVLRSPGPGHSHFLQ
LFDPPKSSKPKLQEACSSIREVRPCTRLEMPDNLYTFVLKVQDQTDIIFEVGDEQQLNSWLAELRASTGL
GLEHPDTELPLSLAAEPGPARSPRGSTDSLDQGASPGVLLDPACQKTDHFLSCYPWFHGPISRVRAAQLV
QLQGPDAHGVFLVRQSESRRGEYVLTFNLQGRAKHLRLVLTERGQCRVQHLHFPSVVDMLRHFQRSPIPL
ECGAACDVRLSGYVVVLSQAPGSSNTVLFPFSLPHWDSELGHPHLSSVGCPPSHGAEALPGQVTPPEQIF
HLVPSPEELANSLRQLELESVSSARDSDYDMDSSSRGHLRAIDNQYTPLSQLCREADV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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