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Report for CCDS77308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77308.1 Public Homo sapiens 19 ERF 24 110 108 CCDS HistoryNCBI Gene:2077Re-query CCDS DB by CCDS ID:77308.1Re-query CCDS DB by GeneID:2077See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440177.6 ENSP00000388173.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440177.6Link to Ensembl Protein Viewer:ENSP00000388173.2Re-query CCDS DB by Nucleotide ID:ENST00000440177Re-query CCDS DB by Protein ID:ENSP00000388173
Original member Current member NCBI NM_001301035.2 NP_001287964.1 Accepted alive Link to Nucleotide Sequence:NM_001301035.2Link to Protein Sequence:NP_001287964.1Re-query CCDS DB by Nucleotide ID:NM_001301035Re-query CCDS DB by Protein ID:NP_001287964Link to BLAST:NP_001287964.1
Original member Current member NCBI NM_001308402.2 NP_001295331.1 Accepted alive Link to Nucleotide Sequence:NM_001308402.2Link to Protein Sequence:NP_001295331.1Re-query CCDS DB by Nucleotide ID:NM_001308402Re-query CCDS DB by Protein ID:NP_001295331Link to BLAST:NP_001295331.1
Original member Current member NCBI NM_001312656.2 NP_001299585.1 Accepted alive Link to Nucleotide Sequence:NM_001312656.2Link to Protein Sequence:NP_001299585.1Re-query CCDS DB by Nucleotide ID:NM_001312656Re-query CCDS DB by Protein ID:NP_001299585Link to BLAST:NP_001299585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287964.1 473 P50548-2 473 100% 0 0
NP_001295331.1 473 P50548-2 473 100% 0 0
NP_001299585.1 473 P50548-2 473 100% 0 0

Chromosomal Locations for CCDS 77308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42248465 42249738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42249827 42249942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42250331 42250362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGAATTACGACAAGCTGAGCCGGGCCCTGCGCTATTACTATAACAAGCGCATTCTGCACAAGACCAAGG
GGAAACGGTTCACCTACAAGTTCAATTTCAACAAACTGGTGCTGGTCAATTACCCATTCATTGATGTGGG
GTTGGCTGGGGGTGCAGTGCCCCAGAGTGCCCCGCCAGTGCCGTCGGGTGGTAGCCACTTCCGCTTCCCT
CCCTCAACGCCCTCCGAGGTGCTGTCCCCCACCGAGGACCCCCGCTCACCACCAGCCTGCTCTTCATCTT
CATCTTCCCTCTTCTCGGCTGTGGTGGCCCGCCGCCTGGGCCGAGGCTCAGTCAGTGACTGTAGTGATGG
CACGTCAGAGCTGGAGGAACCGCTGGGAGAGGATCCCCGCGCCCGACCACCCGGCCCTCCGGATCTGGGT
GCCTTCCGAGGGCCCCCGCTGGCCCGCCTGCCCCATGACCCTGGTGTCTTCCGAGTCTATCCCCGGCCTC
GGGGTGGCCCTGAACCCCTCAGCCCCTTCCCTGTGTCGCCTCTGGCCGGTCCTGGATCCCTGCTGCCCCC
TCAGCTCTCCCCGGCTCTGCCCATGACGCCCACCCACCTGGCCTACACTCCCTCGCCCACGCTGAGCCCG
ATGTACCCCAGTGGTGGCGGGGGGCCCAGCGGCTCAGGGGGAGGCTCCCACTTCTCCTTCAGCCCTGAGG
ACATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAGCCCCCGCGCCTTCCT
GCACTACCCTGGGCTGGTGGTGCCCCAGCCCCAGCGCCCTGACAAGTGCCCGCTGCCGCCCATGGCACCC
GAGACCCCACCGGTCCCCTCCTCGGCCTCGTCATCCTCTTCTTCTTCTTCCTCCCCATTCAAGTTTAAGC
TCCAGCCGCCCCCACTCGGACGCCGGCAGCGGGCAGCTGGGGAGAAGGCCGTAGCCGGTGCTGACAAGAG
CGGTGGCAGTGCAGGCGGGCTGGCTGAGGGGGCAGGGGCGCTAGCCCCACCGCCCCCGCCACCACAGATC
AAGGTGGAGCCCATCTCGGAAGGCGAGTCGGAGGAGGTAGAGGTGACTGACATCAGTGATGAGGATGAGG
AAGACGGGGAGGTGTTCAAGACGCCCCGTGCCCCACCTGCACCCCCTAAGCCTGAGCCCGGCGAGGCACC
CGGGGCATCCCAGTGCATGCCCCTCAAGCTACGCTTTAAGCGGCGCTGGAGTGAAGACTGTCGCCTCGAA
GGGGGTGGGGGCCCCGCTGGGGGCTTTGAGGATGAGGGTGAGGACAAGAAGGTGCGTGGGGAGGGGCCTG
GGGAGGCTGGGGGGCCCCTCACCCCAAGGCGGGTGAGCTCTGACCTCCAGCATGCCACGGCCCAGCTCTC
CCTGGAGCACCGAGACTCCTGA

Translation (473 aa):
MNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVLVNYPFIDVGLAGGAVPQSAPPVPSGGSHFRFP
PSTPSEVLSPTEDPRSPPACSSSSSSLFSAVVARRLGRGSVSDCSDGTSELEEPLGEDPRARPPGPPDLG
AFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGPGSLLPPQLSPALPMTPTHLAYTPSPTLSP
MYPSGGGGPSGSGGGSHFSFSPEDMKRYLQAHTQSVYNYHLSPRAFLHYPGLVVPQPQRPDKCPLPPMAP
ETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSGGSAGGLAEGAGALAPPPPPPQI
KVEPISEGESEEVEVTDISDEDEEDGEVFKTPRAPPAPPKPEPGEAPGASQCMPLKLRFKRRWSEDCRLE
GGGGPAGGFEDEGEDKKVRGEGPGEAGGPLTPRRVSSDLQHATAQLSLEHRDS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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